CF838146

Overview
NameCF838146
Unique NameCF838146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838146 vs. ExPASy Swiss-Prot
Match: DI194_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.896e-28
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   14 MDSDFWTSRLAAAKRQYTLQQ---HHHQS----------SQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDI 187
            MDSD W SRL AAKRQY LQ+   HHH +          S +DR   DD E ED+VRPDFPCPYCYED DI
Sbjct:    1 MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRYGYDDVEPEDEVRPDFPCPYCYEDHDI 71          

HSP 2 Score: 62.003 bits (149), Expect = 2.896e-28
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 3
Query:  192 SLCSHLEDEHSCESKATVCPICSVKVARDMLSHITLRHGH 311
            SLC+HLEDEH  ESK   CP+CS ++++D+L HITL+H +
Sbjct:   73 SLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSY 112          
BLAST of CF838146 vs. ExPASy Swiss-Prot
Match: DI191_ORYSJ (Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.179e-22
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 2
Query:   14 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDI 187
            MDS+ W SRLAAAKR Y  Q  H      DR  +++ +++++VRP+F CPYCYED D+
Sbjct:    1 MDSEHWISRLAAAKRFYAAQLGH-----ADRAGMEEVDMDEEVRPEFACPYCYEDHDV 53          

HSP 2 Score: 61.2326 bits (147), Expect = 1.179e-22
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 3
Query:  192 SLCSHLEDEHSCESKATVCPICSVKVARDMLSHITLRHGH 311
            SLC+HLE+EH  E  A  CPICS K+A+DML+HIT++HG+
Sbjct:   55 SLCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGY 94          
BLAST of CF838146 vs. ExPASy Swiss-Prot
Match: DI193_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.015e-16
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 3
Query:  192 SLCSHLEDEHSCESKATVCPICSVKVARDMLSHITLRHGH 311
            SLC+HLE++H  E   + CPIC  K+ RDML+HIT++HG+
Sbjct:   75 SLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGY 114          

HSP 2 Score: 50.447 bits (119), Expect = 1.015e-16
Identity = 30/74 (40.54%), Postives = 34/74 (45.95%), Query Frame = 2
Query:   14 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVR---------------PDFPCPYCYEDFDIA 190
            MDS+ W S LAAAKR Y  Q  H        +   + E+EDD                 PD  CPYCYED DIA
Sbjct:    1 MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWPDVACPYCYEDHDIA 74          
BLAST of CF838146 vs. ExPASy Swiss-Prot
Match: DI196_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.018e-16
Identity = 21/40 (52.50%), Postives = 33/40 (82.50%), Query Frame = 3
Query:  192 SLCSHLEDEHSCESKATVCPICSVKVARDMLSHITLRHGH 311
            SLC H++++H  ++K  VCPIC+VKV+ DM++HITL+H +
Sbjct:   57 SLCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHAN 96          

HSP 2 Score: 51.2174 bits (121), Expect = 1.018e-16
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 2
Query:   14 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDI 187
            MDSD W+ RLA+A R+Y L      S   + L  ++ E EDD R ++ CP+C + FDI
Sbjct:    1 MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDI 55          
BLAST of CF838146 vs. ExPASy Swiss-Prot
Match: DI193_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 6.756e-15
Identity = 20/40 (50.00%), Postives = 32/40 (80.00%), Query Frame = 3
Query:  192 SLCSHLEDEHSCESKATVCPICSVKVARDMLSHITLRHGH 311
            SLC H++++H  E+K  VCP+C+V+V  DM++HITL+H +
Sbjct:   57 SLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHAN 96          

HSP 2 Score: 46.9802 bits (110), Expect = 6.756e-15
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 2
Query:   14 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDI 187
            MDSD W+ RLA+A R+Y L      S     L  ++ + E++ R +F CP+C + FDI
Sbjct:    1 MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDI 55          
BLAST of CF838146 vs. ExPASy Swiss-Prot
Match: DI191_ARATH (Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.029e-11
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 3
Query:  195 LCSHLEDEHSCESKATVCPICSVKVARDMLSHITLRHG 308
            LC H++DEH+ ESK  VCP+CS+KV  D+++HITL HG
Sbjct:   49 LCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHITLHHG 86          

HSP 2 Score: 31.187 bits (69), Expect = 1.029e-11
Identity = 9/27 (33.33%), Postives = 18/27 (66.67%), Query Frame = 2
Query:  107 LSIDDFEVEDDVRPDFPCPYCYEDFDI 187
            +  ++ + +DD + +F CP+C E +DI
Sbjct:   20 MGFEEIDGDDDFQEEFACPFCAESYDI 46          
The following BLAST results are available for this feature:
BLAST of CF838146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DI194_ORYSJ2.896e-2859.15Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza ... [more]
DI191_ORYSJ1.179e-2250.00Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa sub... [more]
DI193_ORYSJ1.015e-1655.00Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza ... [more]
DI196_ARATH1.018e-1652.50Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabid... [more]
DI193_ARATH6.756e-1550.00Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabid... [more]
DI191_ARATH1.029e-1160.53Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838146 ID=CF838146; Name=CF838146; organism=Citrus sinensis; type=EST; length=313bp
TTCTAATATTCCAATGGATTCCGATTTCTGGACCTCTCGTCTGGCCGCCG
CCAAGCGTCAGTACACGTTGCAGCAGCATCATCATCAGAGCTCTCAAATA
GATCGGCTGAGCATAGATGATTTTGAGGTAGAAGATGATGTACGGCCTGA
TTTTCCATGTCCGTACTGTTATGAGGATTTTGATATAGCGCTCGCTGTGT
TCGCATCTCGAAGATGAGCACTCCTGCGAGTCCAAAGCTACCGTTTGTCC
CATTTGCTCAGTTAAAGTTGCACGGGACATGTTAAGTCATATTACTTTGC
GGCATGGACACTT
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