CF838147

Overview
NameCF838147
Unique NameCF838147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838147 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 58/146 (39.73%), Postives = 77/146 (52.74%), Query Frame = -2 
Query:  252 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXACCGERVGKVKDPYGFTWL 683
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CF838147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH1.429e-1639.73Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838147 ID=CF838147; Name=CF838147; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTTTTTTTCTATACTGCCAGCTGTCAGTTCCTTCAAAATTAA
TCAAAAACATCCATCATCACGATCAACGTTCAGCAATATCATCAAGATAT
CCGAAATACTAAAAGAGCCTAGAGCTATAAACCCACAGCAGTAAAGACGA
ACGACAAAAGAGAGTTATGTGATAGTAGATCAATATCTAAAGATCAGATC
CGGCGGCTCTTAAGCTTCCACGCCAGCGCACTTCTTGACCGGGGAGCAAA
TGAGCCAAGTGAAGCCATAAGGATCTTTGACCTTTCCCACGCGCTCTCCA
CAACACGCGCCGTTGCCTTCAGCGAGCTCACCCTCAGCAACAGCTCCAGC
ACTCACAGCCTTGGCGACGGCAGCCTCCACGTCCTCGGTCTCCAAGCAAA
GCACGCATCCGGTCCCCACGGTCTGTGCAGCAGCAGAGTCACCGGAAACG
TCAGAGACAAGGAAAGTGGAGCCGGCAATCTCGAGTTGAGCGCAGGAGAT
GAGTGGGAGCTCCTGTTCAGCCTTGCGTTTGGTTTCCACGCTACGGCCGA
TCTCCACGGCACCAAACGCGGTCTTGTAGAACTGAACAGCGTCAGTAGCC
TTCGGTGCTTCCACAAGCAACTGCGGCTTCATCCCCGTGAAGCTGGCCAC
GGTAGCAGGAGCCTTCTCCGGCGCAGCTCCATTCTGAACCTCCTGGACAT
CAGCCATTGAGCGAGAGAGTTTTGGAGTC
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