CF838149

Overview
NameCF838149
Unique NameCF838149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838149 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 70/130 (53.85%), Postives = 81/130 (62.31%), Query Frame = 2 
Query:   29 FMQWKKKKMEERNAGLAAQQAERANNDRMSGRELFLSNASLFVDDAEAFEEYHR*EEADSNEQKGKDESATSGPSNSSG-----AEAXXXXXXXXXXXXXXXXXXXXXXXXASLSRTSIQICEPGIEASS 403
            FM+WK+KK+ ER+AGLAA QAERA NDRMSGRELFLSNASLFVDDAEA EEY R  E +  EQK K++ A +G S SSG     ++                         ASLS+TSIQI EP  E SS
Sbjct:  242 FMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDDAEACEEYEREREQEETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMDELDELEASLSKTSIQIREPNDEGSS 371
[Close]
BLAST of CF838149 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.060e-23
Identity = 64/128 (50.00%), Postives = 80/128 (62.50%), Query Frame = 2 
Query:   29 FMQWKKKKMEERNAGLAAQQAERANNDRMSGRELFLSNASLFVDDAEAFEEYHR*EEADSNEQ---KGKDESATSGPSNSSGAEAXXXXXXXXXXXXXXXXXXXXXXXXASLSRTSIQICEPGIEASS 403
            FM+WK+KK EER AGLAA +AERA NDRMSGRELF++++S+FVDDAEA++ Y R EE+++NE+   K +DE  +S  SN    E                         ASLSRTSIQI EPG   SS
Sbjct:  242 FMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDDAEAYDVYERQEESEANEEPSNKNQDEGPSSSTSNGKEVE---ESDDEDINIDDDLDIDELNELEASLSRTSIQIREPGEGTSS 366
The following BLAST results are available for this feature:
BLAST of CF838149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H21_ARATH6.005e-2753.85Zinc finger CCCH domain-containing protein 21 OS=A... [more]
C3H11_ORYSJ1.060e-2350.00Zinc finger CCCH domain-containing protein 11 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838149 ID=CF838149; Name=CF838149; organism=Citrus sinensis; type=EST; length=591bp
TCAACAACACCAATGACTACTGCAGTTGTTTATGCAATGGAAGAAGAAAA
AGATGGAAGAAAGAAATGCAGGTTTGGCTGCGCAACAAGCTGAGAGGGCC
AATAATGACCGTATGAGTGGCCGTGAGTTGTTTCTATCAAATGCAAGCTT
GTTTGTGGATGATGCTGAGGCGTTTGAAGAATACCACAGATAAGAAGAAG
CTGACAGTAATGAACAGAAGGGTAAGGATGAATCAGCTACATCAGGACCA
AGCAATTCCAGTGGTGCAGAGGCTGATTCCGAAGAGATCCTTCCTGATGA
CGATGATGACGACGAAATGGACTTGGATGAGTTAAATGAGCTCGAAGCAA
GTTTGTCAAGAACGTCTATTCAAATCTGTGAGCCAGGGATCGAGGCTTCA
TCTTACAGGGAGCAAGGTATTACAGTCTTTCTGGCAAACCACCATAAATC
TATCAAGGGATTAAGAGAGCATGTGTTTGGCTTTCTGATCGACTGACATC
AATTGAAATAACCCATGTTTTAACTCAAGATTCAATTTTGTATCATGTGC
ACTTGTTTTGTGCTTGAAATGTGATTTTTGCGGTTTTCGTT
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