CF838153

Overview
NameCF838153
Unique NameCF838153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838153 vs. ExPASy Swiss-Prot
Match: PRT1_ARATH (E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.693e-35
Identity = 95/278 (34.17%), Postives = 143/278 (51.44%), Query Frame = 2 
Query:    2 WHESNCPVCRNPYNHFPSICXXXXXXXXXXYPLTYEKRERQVAEEEKQLGHFSPQVDYNLFGSPTNKEVDILGKSLDSPSQQQIKLYSESRFSGEGKSSPCMKSLETTAESGDDAMLKLVTSSECSEATANSTAQECGLVGNDL--EHKAENRVSVDDLSCAACKKMLFKPVVLNCGHVFCELCL--FVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERFSDLYAER----KEALLKQTSGATQARRRKNRSASFPKHVYASLWLGN-GPKIHFG 808
            + ES+CP+CR+PY HFPS+C          YPL ++KRE QV +EE++   FSPQ+D  L  S  +      G SL+   +Q+++           + S     L +++  GD   +    + E ++A A +  +      N+L  ++K   ++S DDL C+ACK++L +PVVLNCGHV+CE C+     E    KC  C    P G P VCLI+E  LEE F + Y  R    ++ L   + G  Q+  ++  S S   +     WL N G  +HFG
Sbjct:   57 FRESHCPICRDPYVHFPSVCQKLYFLLKKMYPLAHKKREEQVLKEEQERECFSPQIDLVLDLSVCS------GDSLNVSDKQKVE-----------ECSNAANLLSSSSSRGDIPCIP--KNQEPTDAKALNVHE------NELLKDNKVSKQISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGFPKVCLILEQLLEENFPEEYNSRSSKVQKTLAHNSKGNIQSYLKEGPSLSNDNN-NDDPWLANPGSNVHFG 308
The following BLAST results are available for this feature:
BLAST of CF838153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRT1_ARATH3.693e-3534.17E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838153 ID=CF838153; Name=CF838153; organism=Citrus sinensis; type=EST; length=812bp
TTGGCATGAGTCTAACTGCCCAGTTTGTCGTAACCCTTACAATCATTTTC
CAAGTATTTGTCATTTGCTGCACTTCTTGCTCAAGAAGCTGTATCCTTTG
ACCTATGAGAAAAGGGAAAGGCAAGTGGCAGAAGAAGAGAAGCAACTCGG
CCACTTCTCACCACAGGTTGATTATAATTTATTTGGATCACCTACTAATA
AGGAGGTTGATATCTTGGGCAAGTCTCTAGATTCCCCCTCTCAACAGCAG
ATAAAATTGTATTCAGAAAGTCGTTTTTCTGGGGAAGGGAAATCTTCCCC
CTGCATGAAATCATTGGAAACGACCGCAGAATCTGGAGATGATGCAATGC
TGAAATTGGTGACATCTTCAGAATGCTCTGAAGCCACTGCAAATTCAACT
GCCCAAGAATGCGGTTTGGTTGGAAATGATCTTGAACATAAAGCTGAAAA
CCGGGTCTCAGTTGATGATTTATCTTGCGCTGCATGCAAGAAGATGCTCT
TTAAGCCAGTTGTTCTTAACTGTGGACATGTGTTTTGTGAACTTTGTTTG
TTTGTTCCTGAAGATGGAAATTTTAAGTGCCCAAATTGTCAAAGCTTGCA
GCCTTATGGGCTCCCTAGCGTGTGTTTGATTATAGAGCATTTCTTGGAGG
AGCGGTTTTCTGATTTATATGCAGAGAGAAAGGAAGCTTTATTGAAACAA
ACCAGTGGTGCAACACAGGCTCGACGTCGGAAAAATCGATCAGCTTCATT
CCCTAAACATGTTTACGCATCATTGTGGCTTGGCAATGGGCCTAAGATCC
ATTTTGGAGTGG
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