CF838154

Overview
NameCF838154
Unique NameCF838154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10886 contig Csv1_Contig10886:1242..2021. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838154 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.948e-30
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  468 DEKVAESYRASAWKPKFDVXXXXXXXXXXXA-GSDGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKK-AKV 779
            D+KVAESYR + WKPKF V           A GSDG++GFQKKVFDLLYK+ADIPFL  +K KI D+IEK EKQPNLTIGILV+VV V +++ F++IFGGKK AKV
Sbjct:  398 DDKVAESYRETTWKPKFTVEKDKLKAEEEAATGSDGISGFQKKVFDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGGKKPAKV 503          
BLAST of CF838154 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.340e-30
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = -3
Query:  468 DEKVAESYRASAWKPKFDVXXXXXXXXXXXAG-SDGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKAKV 779
            DEKVAE+YR S WKPKFDV           AG +DGL  +QKKVFDLLYKVADI FL AYK KI+++IEK E QPNLTIG+L+S+V V +++ FK+IFGG KAKV
Sbjct:  391 DEKVAETYRQSTWKPKFDVEKEKQKAEDEAAGEADGLKSYQKKVFDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAKV 495          
BLAST of CF838154 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.633e-27
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = -3
Query:  477 DEKVAESYRASAWKPKFDVXXXXXXXXXXXAG-------SDGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKK 779
            D+K+AESYR + WKPKF++           A        S+G+AG QKK FDLLYK+ADI FL   K KII++IEKGEKQPNLTIGI+VSVV V +++ F++IFGGKK
Sbjct:  397 DDKIAESYRETTWKPKFNIEKEKQKHEEEAAAAAAARSESEGIAGIQKKAFDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGGKK 504          
BLAST of CF838154 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.307e-26
Identity = 62/103 (60.19%), Postives = 75/103 (72.82%), Query Frame = -3
Query:  474 DEKVAESYRASAWKPKFDVXXXXXXXXXXXAGS-DGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 779
            DEKVAE+YR + WKPKFDV           AGS DGL  +QK VFDLL KVAD+ FL AYK KI ++IEK E+QPNLTIG+LV++V V  ++  K+IFGGKKA
Sbjct:  389 DEKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGGKKA 491          
BLAST of CF838154 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.944e-20
Identity = 41/69 (59.42%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  474 DGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 680
            DGL G QK VFD+LYK+AD+PFL  +K+K++++IEK E QPN+TIG++VS++ VI ++L K++FGGKKA
Sbjct:  426 DGLKGIQKAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGGKKA 494          
The following BLAST results are available for this feature:
BLAST of CF838154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CALX_SOYBN1.948e-3065.09Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX2_ARATH4.340e-3063.81Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_PEA2.633e-2756.48Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX1_ARATH1.307e-2660.19Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX_HELTU6.944e-2059.42Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838154 ID=CF838154; Name=CF838154; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTCCCTGAACTATAAAATATAATAATTGAAACCTA
AGGCTAAGTTGTTATATCCTTACTTTCTGCAATAGAGAATAAAACTCTCC
ACAATTAGCCATAACAATTTTTTCTTCAATGCAGAAAACGAATCATCTCA
GCATTAGACTGTCTCAAATTATACACTCTTTCATACATTTTAGTGTTTCA
AAACAAAGCTCAAAAAGAACGAAAAAGAAGAAAAAAGAAAAGGCAAAAGC
CAAGAATCCAGCTAGGGAAAACAACTAAAGCTGATAATCTACCAAAAGTG
CAGCTAATAGCCACAGGCATCCTGCTTCCATTTGTTTAATTATCGCGTCT
CCTCCGACGAGCAGGAGCAGCAGCAGTTTCTTCCTTCTCGGTCTCTTCTT
CCTTTTCACCACTGTCCTCTTGTTTGCTCGAGGAACTCTCTGCAGCTTCT
GTTTCTTTTGGGGGCTCTACTTTAGCCTTCTTTCCACCAAAAATGATCTT
GAACAGAACTGTGATGATCACCGCCACAACAGAGACAAGGATACCAATTG
TAAGGTTTGGTTGTTTCTCTCCCTTCTCAATCACATCAATGATCTTAAGT
TTGTATGCATCCAAGAAAGGAATGTCTGCAACCTTGTACAAGAGATCAAA
TACCTTCTTCTGGAAGCCTGCAAGGCCATCTGAACCAGCAGCTGCTTCCT
CAGCCTTCAGTTTCTCTTTCTCAACATCAAACTTAGGCTTCCATGCAGAA
GCCCGATAGGACTCTGCAACTTTCTCATCCT
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