CF838162

Overview
NameCF838162
Unique NameCF838162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10937 contig Csv1_Contig10937:576..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838162 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.483e-21
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = -2 
Query:  138 EEDEHCDTLCGSCGGNYNADEFWIGCAISERWFHGKCVKITPAKAVNIKQYKCPSCSCKRGR 323
            +EDE  +T CG+CG +Y ADEFWI C + E WFHGKCVKITPA+A +IKQYKCPSCS KR R
Sbjct:  193 DEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254
The following BLAST results are available for this feature:
BLAST of CF838162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH2.483e-2169.35PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838162 ID=CF838162; Name=CF838162; organism=Citrus sinensis; type=EST; length=447bp
ATGAACAAACATCACGACAAATTCAGTTACATAACTTTTTTAACTTTTAA
AAGTTGACATTTCTATACTATGTCGGCCACGGAGGAACGCTCTTTGAACC
ACTCCAATGGTAAATCGAGATTTAAAGACTACTACTGCCTGCCTCTCTTA
CAGCTGCAAGATGGGCATTTGTATTGCTTAATATTCACAGCCTTAGCGGG
GGTTATCTTCACACACTTCCCATGGAACCACCTCTCAGAGATGGCACAGC
CAATCCAAAACTCATCTGCGTTGTAATTTCCACCACAGCTGCCACAAAGC
GTGTCACAATGTTCATCCTCCTCGACATCGAAACTCTCATCTGCTAGCTT
AGGGCTACTTTTCACTTGGCCATCATTTGATCTCTTAATGCTGCCGCGAG
ATTTGCTGCTACTATCCACACTGGGGATATCTTTTATAAGCTTCCTT
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