CF838168

Overview
NameCF838168
Unique NameCF838168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13608 contig Csv1_Contig13608:515..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.701e-85
Identity = 164/219 (74.89%), Postives = 180/219 (82.19%), Query Frame = -2
Query:  142 MVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQ-SXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 795
            MVVDQKFVVKIPDGMA EQAAPLLCAGVTV+SPL+HFGLK+ S                  +AKAMGHHVTVISSSDKK+ EA++HLGAD YLVSSDAT+MQEAADSLDYIIDTVP  HPLEPY           L GVINTP+QF++PMVMLGRKAITGSFIGSMKET+EML+FC EKG+TS IEV+KMDY+N AFERLEKNDVRYRFVVDVAGSKLD
Sbjct:  139 MVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLKEISGLRGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAIDHLGADAYLVSSDATQMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSMKETEEMLDFCNEKGITSTIEVVKMDYINTAFERLEKNDVRYRFVVDVAGSKLD 357          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.444e-85
Identity = 161/218 (73.85%), Postives = 177/218 (81.19%), Query Frame = -2
Query:  145 SMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKL 798
            +MVVDQKFVVKIPDGMA EQAAPLLCAGVTV+SPL+HFGLKQS                  IAKAMGHHVTVISSSDKKR EA++HLGAD YLVSSDA RMQEAADSLDYIIDTVP  HPLEPY           L GV+NTP+QF++PMVMLGRK+ITGSFIGSMKE  EMLEFC+EK ++S IE++KMDY+N AFERLEKNDVRYRFVVDVAGSKL
Sbjct:  138 AMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLNHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRAEALDHLGADDYLVSSDAARMQEAADSLDYIIDTVPVFHPLEPYLSLLKIDGKLILMGVVNTPLQFVSPMVMLGRKSITGSFIGSMKELAEMLEFCKEKDLSSTIEIVKMDYINTAFERLEKNDVRYRFVVDVAGSKL 355          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.103e-84
Identity = 159/219 (72.60%), Postives = 177/219 (80.82%), Query Frame = -2
Query:  142 SMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 798
            SMVVDQKFVVKIP+GMA EQAAPLLCAG+TV+SPL+HFG KQS                  IAKAMGHHVTVISSS+KKR EA+EHLGAD YLVSSD  +MQEA+DSLDYIIDTVP  HPLEPY           L GVINTP+QF++PMVMLGRK+ITGSFIGSMKET+EML+FC+EKGVTS IE++KMDY+N A ERLEKNDVRYRFVVDV GSKLD
Sbjct:  138 SMVVDQKFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGADDYLVSSDTDKMQEASDSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVRYRFVVDVIGSKLD 356          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 1.440e-84
Identity = 163/218 (74.77%), Postives = 175/218 (80.28%), Query Frame = -2
Query:  145 SMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKL 798
            SMVV QKFVV+IPDGM+ EQAAPLLCAG+TV+SPL HFGLKQS                  IAKAMGHHVTVISSSDKKR EAMEHLGAD+YLVSSD   MQ+AAD LDYIIDTVP  HPLEPY           L GVIN P+QF+TPMVMLGRK+ITGSFIGSMKET+EMLEFC+EKGV SMIEVIKMDY+N AFERLEKNDVRYRFVVDVAGSKL
Sbjct:  138 SMVVHQKFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEAMEHLGADEYLVSSDVESMQKAADQLDYIIDTVPVVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGVASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGSKL 355          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.922e-82
Identity = 156/219 (71.23%), Postives = 173/219 (79.00%), Query Frame = -2
Query:  142 SMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 798
            SMVVDQ FVVKIP+GMA EQAAPLLCAG+TV+SP +HFG  QS                  IAKAMGHHVTVISSS+KKR EA+EHLGAD YLVSSD  +MQEAADSLDYIIDTVP  HPLE Y           L GVINTP+QF++PMVMLGRK+ITGSFIGSMKET+EML+FC+EKGVTS IE++KMDY+N A ERLEKNDV YRFVVDVAGSKLD
Sbjct:  138 SMVVDQNFVVKIPEGMAPEQAAPLLCAGITVYSPFNHFGFNQSGFRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGADDYLVSSDTDKMQEAADSLDYIIDTVPVGHPLELYLSLLKIDGKLILIGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVSYRFVVDVAGSKLD 356          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.811e-80
Identity = 154/218 (70.64%), Postives = 170/218 (77.98%), Query Frame = -2
Query:  142 MVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 795
            +VV ++FVVKIPDG+  EQAAPL+CAGVTV+SPL  FGLKQS                  IAKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY           LTGVIN P+QF++PMVMLGRK+ITGSFIGSMKET+EMLEFC+EKG+TS IEVIKMDYVN A ERLEKNDVRYRFVVDV GSKLD
Sbjct:  139 IVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGSKLD 356          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.811e-80
Identity = 154/218 (70.64%), Postives = 170/218 (77.98%), Query Frame = -2
Query:  142 MVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 795
            +VV ++FVVKIPDG+  EQAAPL+CAGVTV+SPL  FGLKQS                  IAKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY           LTGVIN P+QF++PMVMLGRK+ITGSFIGSMKET+EMLEFC+EKG+TS IEVIKMDYVN A ERLEKNDVRYRFVVDV GSKLD
Sbjct:  139 IVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGSKLD 356          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.795e-80
Identity = 152/219 (69.41%), Postives = 172/219 (78.54%), Query Frame = -2
Query:  142 SMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 798
            S VV+QKFVVKIP+G+A EQ APLLCAGVTV+SPLSHFGLK                    +AKA+GHHVTVISSSDKK+ EA+E LGAD YLVSSD   MQEAADSLDYIIDTVP  HPLEPY           L GVINTP+QF+TPMVMLGRK+ITGSF+GS+KET+EMLEF +EKG+TSMIE++ MDY+NKAFERLEKNDVRYRFVVDV GSK +
Sbjct:  139 STVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKFE 357          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.923e-79
Identity = 150/217 (69.12%), Postives = 170/217 (78.34%), Query Frame = -2
Query:  142 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 792
            VV QKFVVKIP+GMA+EQAAPLLCAGVTV+SPLSHFGLKQ                   IAKAMGHHVTVISSS+KKR EA++ LGAD Y++ SD  +M E ADSLDY+IDTVP +H LEPY           L GVIN P+QFLTP++MLGRK ITGSFIGSMKET+EMLEFC+EKG++S+IEV+KMDYVN AFERLEKNDVRYRFVVDV GS LD
Sbjct:  140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGSNLD 356          
BLAST of CF838168 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.655e-78
Identity = 153/218 (70.18%), Postives = 169/218 (77.52%), Query Frame = -2
Query:  142 MVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 795
            +VV Q+FVVKIPDG+  EQ A ++CAGVTV+SPL  FGLKQS                  IAKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY           LTGVIN P+QF++PMVMLGRK+ITGSFIGSMKET+EMLEFC+EKG+TS IEVIKMDYVN A ERLEKNDVRYRFVVDVAGSKLD
Sbjct:  139 IVVGQRFVVKIPDGLESEQDA-VMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVAGSKLD 355          
The following BLAST results are available for this feature:
BLAST of CF838168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CADH1_ARACO1.701e-8574.89Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH1_OCIBA8.444e-8573.85Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH1_TOBAC1.103e-8472.60Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH_POPDE1.440e-8474.77Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH2_TOBAC3.922e-8271.23Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH_EUCGL2.811e-8070.64Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH2_EUCGU2.811e-8070.64Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH_MEDSA4.795e-8069.41Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH5_ARATH6.923e-7969.12Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH_EUCBO7.655e-7870.18Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05N21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838168 ID=CF838168; Name=CF838168; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTAACTTATTAGGAGAAATTGTAAACACGGAAGCCAC
ATATGGTTAGGCCAACGACGAAAGCATAAAAACCAAACAAGGCACTCAAA
AAACAAAACGAGCATCATGCCAAAATTGAATTTCTCTACGGATCGAGTTT
GCTTCCGGCAACGTCCACGACGAATCTGTACCTAACGTCGTTCTTTTCGA
GTCTCTCGAATGCTTTGTTAACGTAATCCATCTTGATCACTTCAATCATG
GAGGTGACTCCCTTCTCTCGGCAGAATTCAAGCATTTCCTTTGTCTCCTT
CATGCTCCCAATGAAGCTCCCCGTGATTGCCTTTCTCCCAAGCATAACCA
TAGGGGTAAGAAACTGCATGGGAGTGTTAATGACACCCGTCAAGATCAAC
TTTCCATCAAGCTTCAACAGCGAAAGGTAAGGCTCCAGAGGGTGATTTGC
GGGCACGGTATCAATGATATAATCAAGTGAGTCAGCGGCTTCTTGCATAC
GAGTTGCGTCGGAGCTGACAAGGTACTGATCGGCACCAAGATGCTCCATA
GCTTCCACTCTTTTCTTATCAGAAGAGCTAATCACAGTAACATGGTGTCC
CATCGCCTTAGCTATCAAAACCCCCATGTGACCTACTCCTCCGAGCCCCA
AGATTCCTCCTCTCAGCCCGCTCTGCTTCAATCCAAAGTGGCTCAGGGGA
CTGAACACTGTCACACCAGCACACAATAGCGGTGCCGCCTGCTCCAGTGC
CATCCCATCTGGTATTTTCACCACAAACTTTTGATCAACGACCATGGAC
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