CF838218

Overview
NameCF838218
Unique NameCF838218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.452e-28
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = -3
Query:  373 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 606
            ++ G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   81 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 158          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.452e-28
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = -3
Query:  373 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 606
            ++ G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   80 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 157          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  373 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 591
            I DA FKTFGCGSAIASSS+ TEW+KGK +E+   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ KR
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = -3
Query:  373 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 603
            + G I DACFKT+GCGSAIASSS+ TEWVKGK +EE  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = -3
Query:  370 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 606
            +++G I D  FKTFGCGSAIASSS  TE VKGK +EE + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +KR+
Sbjct:   83 DETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRS 161          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU2_YEAST (Iron sulfur cluster assembly protein 2, mitochondrial OS=Saccharomyces cerevisiae GN=ISU2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  373 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 606
            +KSG I +  FKTFGCGSAIASSS  TE V+G  ++E + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY+ KR
Sbjct:   73 DKSGIIENVKFKTFGCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKTKR 150          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = -3
Query:  373 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 606
            +++G I +  FKTFGCGSAIASSS  TE V+GK +E+   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AKR
Sbjct:   97 DETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_BUCBP (NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nifU PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = -3
Query:  376 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 603
            K+G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct:   49 KNGIIQDACFKTYGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYKNK 124          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = -3
Query:  373 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 597
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = -3
Query:  373 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 597
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
The following BLAST results are available for this feature:
BLAST of CF838218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_MOUSE4.452e-2876.92Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN4.452e-2876.92Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
NIFU_RICPR4.167e-2676.71NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAI1.584e-2570.13NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
ISU1_DEBHA1.584e-2573.42Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU2_YEAST2.701e-2573.08Iron sulfur cluster assembly protein 2, mitochondr... [more]
ISU1_KLULA3.528e-2571.79Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_BUCBP6.017e-2569.74NifU-like protein OS=Buchnera aphidicola subsp. Ba... [more]
NIFU_SHIFL7.859e-2570.67NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]
NIFU_ECOLI7.859e-2570.67NifU-like protein OS=Escherichia coli (strain K12)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05P06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838218 ID=CF838218; Name=CF838218; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTAGTAGTAGAAACATCATTATTTTCCTCCGTCCC
CACACCATCGTGCGCAGAGAATCAACAAAATTTGAACAACATAATTAAAA
CAAACTTAGAACCATGCAGAGGATCACACTCTCAGTGGTTCAGTTACACA
CGCACAATTCAGATTCATAATGTACAAAATGGCAGTTCTAATTAATAACC
ATTAACCCTTGCACCACCTGCCATGTACCATCAATATTAGGATTTGCAGT
GTCCCTGATACACCTTCCACAAGTAGCACATTAACATCATTTTTCAAATG
TTTTCATCAACATCTTCAAGCATCGGCAGCCTTCTCTGCAGGAGCTGCCT
CTGAGGCGGCACTTGATTTGGTACGTTTAGCTTCGTAATCTTTTACAGCA
GCCTTGATAGCATCTTCAGCAAGCATGCTACAATGCAGCTTAACCGGTGG
TAGAGAAAGATGTTTTGCAATTTCCGTGTTCTTAATGGACAAAACTTCCT
CCATCTGCTTCCCTTTCACCCATTCTGTGGCAACAGATGATGAGGCGATG
GCAGAGCCACAACCGAAGGTCTTGAAGCAGGCGTCGACGATCTGACCACT
CTTTTCAT
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