CF838227

Overview
NameCF838227
Unique NameCF838227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 351.288 bits (900), Expect = 3.256e-96
Identity = 157/204 (76.96%), Postives = 178/204 (87.25%), Query Frame = -2
Query:  134 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH 745
            MSSDGPNHNEFDFEFLGNTTGEPY+VQTN+YVNGVGNREQRL+LWFDPT EFHTYS+LW++R VVF+VDETPIRV  NLE KGIPF KDQAMGVYSSIWNADDWATQGG VKTDWSHAPFVASYK F+IDACE P +     +  KC  + +++FWWDEPT+SEL++HQ+HQL+WVRANH+IYDYC D +RFP  P EC HHRH
Sbjct:   92 MSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEIPTTT----DLSKC--NGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFDATRFPVTPLECQHHRH 289          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.883e-65
Identity = 116/204 (56.86%), Postives = 145/204 (71.08%), Query Frame = -2
Query:  137 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAI-PTECVHHR 745
            +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKE+H YS+LWN  Q+VF VDE PIRV  N +  G+ FP DQ M +Y+S+WNADDWAT+GG  KTDWS APF+A+YKGF ID CE  ASV    NAK C +  ++  WWD+P   +L+  Q  +L WVR  + IY+YCTDT R+P I P EC   R
Sbjct:   98 LSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCE--ASV----NAKFCDTQGKR--WWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECKRDR 293          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.606e-64
Identity = 110/203 (54.19%), Postives = 144/203 (70.94%), Query Frame = -2
Query:  137 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 745
            +SS    H+E DFEFLGN TG+PY++QTNV+  G GNREQR++LWFDP+K++H+YS+LWN  Q+VF VD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W  APFVASY+GF +D CE  ASV    NAK C +  ++  WWD+    +L+ +Q  +L WVR  + IY+YCTD  RFP  P EC   R
Sbjct:   97 LSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCE--ASV----NAKFCETQGKR--WWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRVRFPVPPPECRRDR 291          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.563e-64
Identity = 109/203 (53.69%), Postives = 141/203 (69.46%), Query Frame = -2
Query:  137 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 745
            +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK++H+YS+LWN   + F VD+TPIRV  N +  G+ +P DQ M +YSS+WNADDWAT+GGR KTDWS APFVASY+GF +D CE  A       AK C++   +  WWD+P   +L+  Q  +L WVR  H IY+YCTD  R+ A+  EC   R
Sbjct:   97 LSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASA------EAKFCATQGAR--WWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDHDRYAAMAPECKRDR 291          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.130e-63
Identity = 111/203 (54.68%), Postives = 144/203 (70.94%), Query Frame = -2
Query:  137 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 745
            +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H YS+LWN  Q+VFLVD  PIRV  NL+  G+ FP +Q M VY+S+WNADDWAT+GG  KTDWS APFVA YKGF +D CE  ASV    N++ C++  ++  WWD+    +L+  Q  +L WVR    IY+YCTD +R+P +P EC  +R
Sbjct:   97 LSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCE--ASV----NSRFCATQGKR--WWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDRTRYPQLPPECRRNR 291          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.199e-63
Identity = 110/203 (54.19%), Postives = 141/203 (69.46%), Query Frame = -2
Query:  137 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 745
            +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPT ++H YS+LWN  Q+VF VD+ PIRV  N    G+ FP +Q M +Y+S+WNADDWAT+GG  KTDWS APF+ASYKGF ID CE  ASV    NAK C +  ++  WWD+P   +L+  Q  +L WVR  + IY+YCTD  R+  +P EC   R
Sbjct:   96 LSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCE--ASV----NAKFCDTQGKR--WWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDRKRYSQVPPECTRDR 290          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.951e-62
Identity = 110/203 (54.19%), Postives = 141/203 (69.46%), Query Frame = -2
Query:  137 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 745
            +SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIR   N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W++APFVASYKGF ID C+  ASV     AK C++  + R WWD+    +L+  Q  +L WVR    IY+YCTD +RFP +P EC   R
Sbjct:  100 LSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGCQ--ASV----EAKYCAT--QGRMWWDQKEFRDLDAEQWRRLKWVRMKWTIYNYCTDRTRFPVMPAECKRDR 294          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.994e-61
Identity = 109/203 (53.69%), Postives = 142/203 (69.95%), Query Frame = -2
Query:  137 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 745
            +SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W++APF+ASY+GF ID C+  ASV     AK C++  + R WWD+    +L+  Q  +L WVR    IY+YCTD +RFP +P EC   R
Sbjct:   99 LSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQ--ASV----EAKYCAT--QGRMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPVMPAECRRDR 293          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.429e-59
Identity = 101/203 (49.75%), Postives = 136/203 (67.00%), Query Frame = -2
Query:  137 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 745
            +SS+   H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H+YS+LWN  Q+V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+GG  KTDWS+APF ASY  F +D CE     A     + C++   +  WWD+    +L+  Q  +L WVR  + IY+YCTD  R+P +P EC   R
Sbjct:   97 LSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCE----AATPQEVQVCNTKGMR--WWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPTLPPECTKDR 293          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.438e-59
Identity = 105/200 (52.50%), Postives = 134/200 (67.00%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 745
            +SS+GP H+E DFEFLGN TG+PY++ TNV+  G GNREQ+  LWFDPTK FHTYSL+W  + ++F+VD  PIRV  N E  G+PFPK+Q M +YSS+WNADDWAT+GG VKTDWS APF A Y+GF   AC   +  +  D   K S +       +    +ELN +   +L WV+   +IYDYC+D  RFP   P EC
Sbjct:   92 LSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTVSSGSSFCDPKFKSSFTN-----GESQVANELNAYGRRRLRWVQKYFMIYDYCSDLKRFPQGFPPEC 286          
The following BLAST results are available for this feature:
BLAST of CF838227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH9_ARATH3.256e-9676.96Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_SOYBN3.883e-6556.86Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH5.606e-6454.19Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT9.563e-6453.69Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN2.130e-6354.68Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN6.199e-6354.19Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH4_ARATH8.951e-6254.19Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_BRAOB1.994e-6153.69Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH_TOBAC1.429e-5949.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH2.438e-5952.50Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05P11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838227 ID=CF838227; Name=CF838227; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTTACTGTTATGATCGATCTTTTTCCACCCCTCCCTT
TTTTTTGACCTTTTTTTTTCAACTTTTTTACATAAGAAACGCAAATCCTT
TTTCCTTCAGTCATTCACAATCATTCATGGCTAGTGGCGGTGGTGCACGC
ACTCGGTGGGAATAGCTGGGAACCTAGACGTGTCAGTGCAATAGTCATAG
ATGAGGTGATTGGCTCTAACCCACATGAGCTGGTGGCTTTGGTGCACATT
GAGCTCAGACAATGTTGGCTCATCCCACCAGAACCTTTTCTCAGCACTGC
TGCTGCATTTTTTGGCATTATCGGCACCTGCAACCGACGCTGGGCACTCA
CATGCATCAATTTCAAAGCCCTTGTATGATGCAACAAAAGGTGCATGGCT
CCAGTCCGTCTTGACCCTTCCCCCCTGTGTGGCCCAGTCATCAGCATTCC
ATATTGAACTGTACACACCCATGGCTTGGTCCTTTGGGAAGGGAATTCCT
TTGTGCTCCAAGTTAGTGTGCACTCTAATTGGGGTCTCATCCACCAAAAA
TACAACTTGGCGCTGGTTCCAAAGGAGGGAATAGGTATGAAATTCCTTTG
TTGGGTCGAACCAGAGGTCAAGTCTCTGCTCTCTGTTGCCCACACCATTC
ACATAAACATTGGTTTGGACTAAGTATGGCTCTCCTGTAGTGTTCCCCAG
GAACTCAAAATCGAACTCGTTGTGATTTGGACCGTCTGATGACATA
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