CF838228

Overview
NameCF838228
Unique NameCF838228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 363.999 bits (933), Expect = 5.448e-100
Identity = 174/228 (76.32%), Postives = 195/228 (85.53%), Query Frame = 2
Query:   86 MVKMSLIFSLFVGLLMV----GLVSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPAS 757
            MV M L   + + +++V      VS AKFD+LY++SWA +H   +G+  KL LDNYSGAGF S+SKYLFGKVSIQIKLV GDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPY+VQTN+YVNGVGNREQRL+LWFDPT EFHTYS+LW++R VVF+VDETPIRV  NLE KGIPF KDQAMGVYSSIWNADDWATQGG VKTDWSHAPFVASYK F+IDACE P +
Sbjct:    1 MVGMDLFKCVMMIMVLVVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEIPTT 228          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.197e-72
Identity = 128/215 (59.53%), Postives = 159/215 (73.95%), Query Frame = 2
Query:  155 KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSS 793
            +F   Y  +WAF+H++Y   G  ++L+LD Y+G GF SK  YLFG  S+ IK+V GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKE+H YS+LWN  Q+VF VDE PIRV  N +  G+ FP DQ M +Y+S+WNADDWAT+GG  KTDWS APF+A+YKGF ID CE  ASV    NAK C +
Sbjct:   32 QFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCE--ASV----NAKFCDT 240          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.637e-70
Identity = 123/210 (58.57%), Postives = 156/210 (74.29%), Query Frame = 2
Query:  170 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSS 793
            Y  +WAF+H++Y   G  + L LD Y+G GF SK  YLFG  S+ IK+V GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G GNREQR++LWFDP+K++H+YS+LWN  Q+VF VD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W  APFVASY+GF +D CE  ASV    NAK C +
Sbjct:   36 YFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCE--ASV----NAKFCET 239          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.498e-70
Identity = 131/241 (54.36%), Postives = 167/241 (69.29%), Query Frame = 2
Query:  110 SLFVGLLMVGLVSSA-----------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSS 793
            SL+  L+++ L S++            F   Y  +WAF+H++Y   G  ++L+LD Y+G GF SK  YLFG  S+ IKLV GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPT ++H YS+LWN  Q+VF VD+ PIRV  N    G+ FP +Q M +Y+S+WNADDWAT+GG  KTDWS APF+ASYKGF ID CE  ASV    NAK C +
Sbjct:    4 SLWTCLILLSLASASFAANPRTPIDVPFGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCE--ASV----NAKFCDT 238          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.673e-70
Identity = 131/240 (54.58%), Postives = 167/240 (69.58%), Query Frame = 2
Query:  113 LFVGLLMVGLVSSA-----------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSS 793
            L + L++V L SSA            F   Y  +WAF+H++Y   G  ++L+LD Y+G GF +K  YLFG  S+ IK+V GDSAGTVTAF +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H YS+LWN  Q+VFLVD  PIRV  NL+  G+ FP +Q M VY+S+WNADDWAT+GG  KTDWS APFVA YKGF +D CE  ASV    N++ C++
Sbjct:    6 LILCLVLVSLASSALCAAPRRPVDVPFGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCE--ASV----NSRFCAT 239          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 7.673e-70
Identity = 122/237 (51.48%), Postives = 165/237 (69.62%), Query Frame = 2
Query:   86 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCS 790
            ++  +++ +L V + M G   S  F++ +  +W  +   +   G  L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS+GP H+E DFEFLGN TG+PY++ TNV+  G GNREQ+  LWFDPTK FHTYSL+W  + ++F+VD  PIRV  N E  G+PFPK+Q M +YSS+WNADDWAT+GG VKTDWS APF A Y+GF   AC   +  +  D   K S
Sbjct:    4 ILNRTVLMTLLV-VTMAGTAFSGSFNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTVSSGSSFCDPKFKSS 239          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.709e-69
Identity = 119/201 (59.20%), Postives = 151/201 (75.12%), Query Frame = 2
Query:  158 FDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPA 754
            FD  Y  +WA +H+ Y   G  ++L+LD  +G GF ++  YLFG  S+ IKLVGGDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK++H+YS+LWN   + F VD+TPIRV  N +  G+ +P DQ M +YSS+WNADDWAT+GGR KTDWS APFVASY+GF +D CE  A
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASA 232          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.729e-67
Identity = 122/224 (54.46%), Postives = 159/224 (70.98%), Query Frame = 2
Query:  101 LIFSL-FVGLLMVGLVSSAK------FDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACE 745
            L+FS+  + L ++GL    +      F   Y+ SWA +H++Y   G T+ L LD  SGAGF SK  YLFG  S+++KLVGGDSAG VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H+YS+LWN  Q+V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+GG  KTDWS+APF ASY  F +D CE
Sbjct:    6 LLFSIVLINLSLLGLCGYPRKPVDVPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCE 229          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.655e-67
Identity = 119/220 (54.09%), Postives = 156/220 (70.91%), Query Frame = 2
Query:   98 SLIFSLFVGLLMVGLVSSA---KFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDAC 742
            S + ++   +L+V L  SA    F D +  +W  +   +   G+ L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS G  H+E DFEFLGN TG+PY++ TNV+  G G+REQ+  LWFDPTK FHTYS++W  + ++FLVD  PIRV  N E  G+PFPK Q M +YSS+WNADDWAT+GG VKTDWS APF A Y+GF   AC
Sbjct:    5 SSLTTIVATVLLVTLFGSAYASNFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGATHDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAAC 224          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.769e-66
Identity = 116/227 (51.10%), Postives = 158/227 (69.60%), Query Frame = 2
Query:  116 FVGLLMVGLVSSA-------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGA 769
            F  L++VG+V S         F   +  +W  +  +    G  L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS GP H+E DFEFLGN +G+PY++ TN++  G GNREQ+  LWFDPT+ FHTYS++W  + ++FLVD TPIRV  N E  G+PFPK+Q M +YSS+WNADDWAT+GG VKTDWS APF A Y+ F+       +S++ +
Sbjct:   11 FYVLMLVGIVVSTMVATCAGSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKAIEFSSKSSISNS 237          
The following BLAST results are available for this feature:
BLAST of CF838228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH9_ARATH5.448e-10076.32Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_SOYBN8.197e-7259.53Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH2.637e-7058.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN4.498e-7054.36Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHB_PHAAN7.673e-7054.58Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH7.673e-7051.48Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT1.709e-6959.20Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC2.729e-6754.46Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH4.655e-6754.09Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN1.769e-6651.10Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05P11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838228 ID=CF838228; Name=CF838228; organism=Citrus sinensis; type=EST; length=799bp
GAAGCTTCAACTTCCCTCCACTTCACTGGGCCTGCTCTGCTCATTCGCTT
ACTTCCTCTCCCCGTTCTTCTGTCTTCATTCTTCAATGGTTAAAATGTCT
TTGATTTTCAGTCTGTTTGTGGGTCTTTTAATGGTAGGTTTGGTCAGCTC
AGCTAAGTTTGATGACCTTTATCAAACAAGCTGGGCATTTAATCATGTTC
AGTATGATGGGGACACTCTCAAGCTTAACCTCGATAATTATTCCGGAGCT
GGGTTTGCGTCAAAGAGCAAGTATTTGTTTGGGAAAGTCTCCATCCAAAT
TAAACTTGTAGGGGGTGACTCTGCTGGAACTGTCACTGCCTTCTATATGT
CATCAGACGGTCCAAATCACAACGAGTTCGATTTTGAGTTCCTGGGGAAC
ACTACAGGAGAGCCATACTTAGTCCAAACCAATGTTTATGTGAATGGTGT
GGGCAACAGAGAGCAGAGACTTGACCTCTGGTTCGACCCAACAAAGGAAT
TTCATACCTATTCCCTCCTTTGGAACCAGCGCCAAGTTGTATTTTTGGTG
GATGAGACCCCAATTAGAGTGCACACTAACTTGGAGCACAAAGGAATTCC
CTTCCCAAAGGACCAAGCCATGGGTGTGTACAGTTCAATATGGAATGCTG
ATGACTGGGCCACACAGGGGGGAAGGGTCAAGACGGACTGGAGCCATGCA
CCTTTTGTTGCATCATACAAGGGCTTTGAAATTGATGCATGTGAGTGCCC
AGCGTCGGTTGCAGGTGCCGATAATGCCAAAAAATGCAGCAGCAGTGCT
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