CF838229

Overview
NameCF838229
Unique NameCF838229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838229 vs. ExPASy Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.964e-36
Identity = 81/150 (54.00%), Postives = 100/150 (66.67%), Query Frame = -2
Query:  266 QSMKESXXXXXXXXXAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQATGGLGY---------TTADSYSQSTTGMHGRPTGGHQMSALAGHGTGQPAAQVTEGVVGSHPIGVNTGTGHN-RAHNTR 685
            +S+KE+         AGMEKTKAT QEK ++M A DPV+KE+AT+KKE +  QAEL+KQ AR+HN+AAKQ+    G+         T   + + STTG +G+P G HQ SA+ GHGTGQP   VTEGVVGSHPIG N G G    AHNTR
Sbjct:    9 ESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMNQAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAMPGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTR 158          
BLAST of CF838229 vs. ExPASy Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.634e-18
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  359 MQSMKESXXXXXXXXXAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQ----ATGGLGYTTADSYSQSTTGMHGRPTGGHQMSALAGHGTG 688
            MQSMK++          GMEK KA+ QEKVD+MK  DP EKEMA E+KEER+  AEL KQEAR HN+ A        GG GYTTA  Y+   TG +G  TGGH        G+G
Sbjct:    1 MQSMKDAAASAKA----GMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQEARHHNATAGHVGGGGIGGTGYTTA-GYNIGDTGGYG-GTGGHDNRGYPTAGSG 108          
BLAST of CF838229 vs. ExPASy Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = -2
Query:  398 SMKESXXXXXXXXXAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQATG-GLGYTTADSYSQSTTGMHGRPTG 682
            S KE+         AGMEKTKA+ QEK +KM AHDP++KEMA EKKEER+ +AE EKQ A+EHN+A KQ TG G G     ++S +TT + G  TG
Sbjct:   10 SAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKHEAEYEKQAAKEHNAAQKQTTGIGTG-----THSYTTTNVTGHRTG 100          
BLAST of CF838229 vs. ExPASy Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = -2
Query:  422 GMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQ--ATGGLGYTTADSYSQSTT 637
            GMEKTKA  QEK ++M   DP++KEMATEKKE+R   AE+ K++A+  ++A KQ  AT G G T   +    TT
Sbjct:   14 GMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQHAAEKQGAATTGTGTTGYGATGNHTT 87          
The following BLAST results are available for this feature:
BLAST of CF838229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PM1_SOYBN2.964e-3654.0018 kDa seed maturation protein OS=Glycine max GN=G... [more]
LEA13_GOSHI1.634e-1850.88Late embryogenesis abundant protein D-113 OS=Gossy... [more]
LEA11_HELAN4.755e-1854.1711 kDa late embryogenesis abundant protein OS=Heli... [more]
LE25_SOLLC3.300e-1150.00Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05P12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838229 ID=CF838229; Name=CF838229; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTCCAAATCAAGCAACTTTTTATTCAACATTTATCAT
AAAAGGGCAACAACACATCACACATTACATCACATGATAATACGCTGCTA
GTCAGATAGACAAGAAGCCAAACAGAAAGCACACTAGAGGATCGTGCAAC
CTCATTCTTACAAATTGACCCTTATTACATAAAACACAAAGGCCAACTTC
ATAAAAAAAATCTAATTGTAAGAACCACCAGTGCCATATCCAGTGGCTCC
CCCACCGCCCCCAACTCGCGTGTTATGTGCGCGGTTGTGGCCCGTCCCAG
TATTGACTCCAATCGGATGCGACCCCACCACCCCTTCAGTCACCTGCGCA
GCCGGTTGCCCTGTTCCATGACCGGCAAGGGCCGACATCTGATGGCCTCC
AGTCGGACGACCGTGCATCCCAGTGGTCGACTGCGAGTAGCTGTCAGCTG
TTGTATAGCCAAGCCCACCCGTCGCTTGCTTTGCCGCCGAATTGTGCTCA
CGAGCCTCCTGCTTCTCGAGCTCCGCTTGCATTCTTCTTTCCTCTTTCTT
CTCCGTGGCCATTTCTTTCTCTACTGGATCATGCGCTTTCATTTTATCAA
CCTTCTCTTGGGCCGTGGCTTTAGTTTTCTCCATGCCAGCCTTGGCAGAG
GCCGCAACGTTAGCTGCCGATTCCTTCATGGACTGCATTTTCACTTTCTT
CAAATTTCTTCTTTGCCTTGAATGCAATTATGCTAACCGTCAACCAATAT
CGTCC
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