CF838333

Overview
NameCF838333
Unique NameCF838333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838333 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.495e-17
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 1 
Query:  160 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFE--SELENISSPPPA-------NDADALMKNLRVSKSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 606
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD                      FS +E +F+E + S +  S  + ++    A       N A++  + +  SK S  + KY +K  KY+NP  + RR   I QPR
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD----------------------FSVMEEEFEEMIASSDGGSMADTVTEADVASYLKMLLNIAESTKEKIYRSKVSSCSPKYNQK--KYMNPNFNCRRNHHIYQPR 143
The following BLAST results are available for this feature:
BLAST of CF838333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH3.495e-1736.02Polyadenylate-binding protein-interacting protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838333 ID=CF838333; Name=CF838333; organism=Citrus sinensis; type=EST; length=815bp
CGGAATCCGAACCCAACAGGCCCGAAACTTCCCTTGGTATATAAGACATT
TGGCTTCCTGATCTTTTCCTGTAACACGTAGCAAAACGAGAAAATATCTT
ATCTCAAATCAAAGATCAGAAGTGAGAATTGGACTTTGATGGCGCTAGTT
TCAGGAAGGTCGACGTTGAACCCCAATGCCCCACTCTTCATTCCAGCTGC
TTTTCGCCAAGTGGAGGATTTCTCCCCCGAATGGTGGCAGCTGATCACGA
CCTCCACATGGTACCACAACTACTGGCTCAGCCAGCATCAAGATGAGGAT
GGCTTTTATGACAATGGTGGAGATGATGAATTTGATGTCAGCAATGTAGC
TGACTTGCTTCCAGATACGTTTGACCTTGATGCTGGCGAAAATTTCTCTA
GCATAGAAGCTCAATTCGATGAGTTTGTTATGTCGTTTGAAAGTGAACTG
GAAAACATTTCATCCCCACCGCCTGCAAATGACGCAGATGCACTGATGAA
GAATTTGAGGGTGTCGAAATCTTCCATGGAAGCTGCCAAATATGTTGAGA
AGCCGGCCAAGTATGTGAACCCAAAGTGCAGCCCCCGCCGCATCCAGCAA
CCCCGTTGAAGAGGGAAAATGTGCAATGACTGTTGTTTGCAGTATGTAGT
TTTTTGCTTTCTGTAGTTGCTGTATAGAGCAAGGCTCTATCTCTTTGTAT
AACTCCTTGTTCATTCTCGTCTTTAATTTCAGTGAAACAAAGAATCATTG
GGGAAAAAAATTGTAAAAAAAAAGATGTACAATTTAGGATAAATGAAACA
AGAAATTGTTCTCTT
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