CF838344

Overview
NameCF838344
Unique NameCF838344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: ALB3_ARATH (Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 5.775e-77
Identity = 151/213 (70.89%), Postives = 163/213 (76.53%), Query Frame = 3
Query:  108 STRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFGIPSLSGPTTIAARQSGSG 746
            ST VR S  E              ++F+R ESLLY                         QK+GGWFGFIS+AME VLKILKDG+ AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFF IPSL GPT+IAARQSGSG
Sbjct:   51 STTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDSSAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSG 259          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: PPF1_PEA (Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.194e-76
Identity = 150/218 (68.81%), Postives = 163/218 (74.77%), Query Frame = 3
Query:   93 NRRLASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFGIPSLSGPTTIAARQSGSG 746
            NR    T+V+ SF +             + +F+R E LLY                         QKNGGWFGFIS+ MEFVLK+LKDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF  IPSL GPT+IAARQSGSG
Sbjct:   26 NRTRLFTKVQFSFHQLPPIQSVSHSVDLSGIFARAEGLLYTLADATVAADAAASTDVAA------QKNGGWFGFISDGMEFVLKVLKDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSG 237          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: ALB31_ARATH (ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.631e-63
Identity = 116/152 (76.32%), Postives = 138/152 (90.79%), Query Frame = 3
Query:  291 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFGIPSLSGPTTIAARQSGSG 746
            ++  WF  I+  ME +LK+LKDG+  VHVPYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+RLY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFF IPSL+GPTT+AARQ+GSG
Sbjct:   92 QSNDWFSGIANYMETILKVLKDGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQNGSG 243          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: ALB32_CHLRE (Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.213e-50
Identity = 96/142 (67.61%), Postives = 119/142 (83.80%), Query Frame = 3
Query:  297 GGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFGIPSLSGPTTI 722
            GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVATFPLT+KQVESTL++Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY ALSN A EGLLTEGFF IPSL GPTTI
Sbjct:   71 GGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVESTLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNALSNAAKEGLLTEGFFWIPSLGGPTTI 212          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: ALB31_CHLRE (Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.859e-50
Identity = 94/154 (61.04%), Postives = 130/154 (84.42%), Query Frame = 3
Query:  288 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLL-TEGFFGIPSLSGPTTIAARQSGSG 746
            Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T+PLTK+QVES +A+Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATIP++IGL+ +L+NVAN+GLL T+GF+ +PSL+GPTT+A RQSG G
Sbjct:  108 QRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTYPLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATIPIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLG 261          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_DESVV (Inner membrane protein oxaA OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=oxaA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 653
            GWFGFI+  +  +L      +       +YG AIILLT+++K+  +PL+ K  +S   M+ LQP +  +++++A ++E++  E  RLY+   VNP  GCLP L  IPV+ GLYQAL N
Sbjct:  323 GWFGFIARPLVTLLDFFYKYVG------NYGTAIILLTILIKLVFWPLSHKSYKSMEQMKKLQPMLAKVREKHADDREKMNEEMMRLYKTYKVNPAGGCLPMLVQIPVFFGLYQALLN 434          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_DESVH (Inner membrane protein oxaA OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=oxaA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 653
            GWFGFI+  +  +L      +       +YG AIILLT+++K+  +PL+ K  +S   M+ LQP +  +++++A ++E++  E  RLY+   VNP  GCLP L  IPV+ GLYQAL N
Sbjct:  323 GWFGFIARPLVTLLDFFYKYVG------NYGTAIILLTILIKLVFWPLSHKSYKSMEQMKKLQPMLAKVREKHADDREKMNEEMMRLYKTYKVNPAGGCLPMLVQIPVFFGLYQALLN 434          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_SYNFM (Inner membrane protein oxaA OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=oxaA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALS 650
            GWF FI++ + +VL             +++G AIILLT+++K+  +PLT+K  +S   M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+ L+
Sbjct:  338 GWFTFIAKPLVYVLDWF------YRYTHNWGVAIILLTIVIKILFWPLTQKSYQSMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYRMLN 448          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_ANADF (Inner membrane protein oxaA OS=Anaeromyxobacter sp. (strain Fw109-5) GN=oxaA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  306 FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFGIPSLS 707
            F F +  + FV++ L+       +  ++G AIILLTV+VKV  +PLT K ++S   M+ LQP+I+ ++ ++  ++E++ L T +LY+Q  VNPL GCLP L  +P+W  LY  L       L  E F  I  L+
Sbjct:  337 FAFFARLLLFVMRWLE------RLVANWGLAIILLTVLVKVLLYPLTAKSMQSMNEMRKLQPEIEKLKAKHGNDREKLNLATMQLYQQHKVNPLGGCLPMLIQLPIWFALYATLQTSVE--LYREPFLWIHDLT 462          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_PELPD (Inner membrane protein oxaA OS=Pelobacter propionicus (strain DSM 2379) GN=oxaA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 54/147 (36.73%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFGIPSLSGPTTIAARQSG 740
            GWF  I++ + + LK     +       +YG AII++T+I+K   FPLT K  +S   MQ +QP + A++++Y  ++E +      LYR   VNPL GCLP L  IPV+  LY+AL   + E      +F I  LSGP  +  +  G
Sbjct:  326 GWFTVIAKPLLYTLKYFYRYVG------NYGVAIIIITIILKALFFPLTHKSYKSMKDMQKIQPMMAALKEKYKDDREGMNKAVMELYRDHKVNPLGGCLPMLVQIPVFFALYKALM-FSIELRHAPFYFWITDLSGPDNLFGQMLG 465          
The following BLAST results are available for this feature:
BLAST of CF838344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
ALB3_ARATH5.775e-7770.89Inner membrane protein ALBINO3, chloroplastic OS=A... [more]
PPF1_PEA2.194e-7668.81Inner membrane protein PPF-1, chloroplastic OS=Pis... [more]
ALB31_ARATH1.631e-6376.32ALBINO3-like protein 1, chloroplastic OS=Arabidops... [more]
ALB32_CHLRE1.213e-5067.61Inner membrane ALBINO3-like protein 2, chloroplast... [more]
ALB31_CHLRE7.859e-5061.04Inner membrane ALBINO3-like protein 1, chloroplast... [more]
OXAA_DESVV3.221e-1940.68Inner membrane protein oxaA OS=Desulfovibrio vulga... [more]
OXAA_DESVH3.221e-1940.68Inner membrane protein oxaA OS=Desulfovibrio vulga... [more]
OXAA_SYNFM4.206e-1939.32Inner membrane protein oxaA OS=Syntrophobacter fum... [more]
OXAA_ANADF5.494e-1938.06Inner membrane protein oxaA OS=Anaeromyxobacter sp... [more]
OXAA_PELPD1.224e-1836.73Inner membrane protein oxaA OS=Pelobacter propioni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06E21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838344 ID=CF838344; Name=CF838344; organism=Citrus sinensis; type=EST; length=748bp
CGAAAACTCTGACCTTTTAATCCCCGTTCGTCGGCACACCACTCCCTTCA
CCATCCTCGTCACTCTCTCGCCACGGGCTCCACCGGCTTCCTAACCGTAG
ACTCGCCTCCACCAGAGTTAGACTCAGCTTCCAAGAAATTCCCCCAATTC
TCTCCCTCGACTCTTCTATCGATCTCAACTCAGTTTTTAGTCGAACTGAG
AGCTTGCTTTACACGCTGGCAGACGCTGCCGTTTCACTTGATTCTGCTTC
TGGCGGAGCTGCCTCCACGTCAGCTGATGGGGCTACGCAGAAAAACGGCG
GCTGGTTCGGTTTTATCTCTGAAGCTATGGAATTCGTTCTCAAGATATTG
AAGGATGGGATTGATGCTGTTCATGTGCCGTATTCATATGGTTTTGCAAT
AATTTTGTTGACAGTTATTGTTAAAGTTGCCACATTTCCTTTAACAAAGA
AACAGGTGGAATCAACATTAGCAATGCAAAACCTTCAACCTAAGATCAAA
GCTATTCAACAAAGATATGCTGGCAATCAGGAAAGAATACAGCTTGAGAC
ATCACGTTTATACAGGCAGGCTGGGGTTAATCCATTAGCAGGTTGTTTGC
CAACATTGGCTACTATACCAGTCTGGATAGGTCTCTATCAAGCTCTTTCA
AATGTGGCAAATGAGGGTTTGTTAACAGAAGGTTTCTTTGGGATACCCTC
ATTGTCTGGGCCAACTACGATTGCTGCTCGACAAAGTGGATCTGGCAT
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