CF838348

Overview
NameCF838348
Unique NameCF838348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6670 contig Csv1_Contig6670:3..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838348 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 468.774 bits (1205), Expect = 1.622e-131
Identity = 238/265 (89.81%), Postives = 238/265 (89.81%), Query Frame = 3
Query:   21 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETXXXXXXXXXXXLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKN 815
            MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLET           LIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTG                VTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKN
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKN 265          
BLAST of CF838348 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 464.537 bits (1194), Expect = 3.060e-130
Identity = 236/265 (89.06%), Postives = 237/265 (89.43%), Query Frame = 3
Query:   21 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETXXXXXXXXXXXLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKN 815
            MAAMVD+KPAASVQGTPLLATATLPVFTRGIYSTKRITLET           LIIVTPA KGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTG                VTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKN
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKN 265          
BLAST of CF838348 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.319e-40
Identity = 97/251 (38.65%), Postives = 137/251 (54.58%), Query Frame = 3
Query:   51 ASVQGTPLLATATLPV-FTRGIYSTKRITLETXXXXXXXXXXXLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSK--TTGXXXXXXXXXXXXXXXXVTVIGTGLGGV-ARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDN 767
            A+++ +P  ++   P  F  G   T  I ++            + I  P   GT+ V+LF HG  L N  YS + +HIASHG+I+VAPQL   + PP    E++ A  V  W  + L+ +LP +  AN    +++GHSRGG+TAFA++L +         F A+IG+DPVAGT+K   T                 V V+GTGLG      +  CAP   NHEEF+  CK +++AHFVA DYGHMD+LDD+
Sbjct:    2 AAIEDSPTFSSVVTPAAFEIGSLPTTEIPVDPVENDSTAPPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQL-CKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAGTNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDD 250          
BLAST of CF838348 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.722e-40
Identity = 94/225 (41.78%), Postives = 131/225 (58.22%), Query Frame = 3
Query:  177 LIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSL-RYGFGA------VIGLDPVAGTSK---TTGXXXXXXXXXXXXXXXXVTVIGTGLGGVAR--CITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKN 815
            L++ TP  +G + V++ LHG  L N  YS++  H++SHGFI++APQLY SI  P   +E+ S AE+ +WL  GL   LP     N+S  A+ GHSRGG+TAFA++L ++G+ +      +IG+DPV GT K   T                  + VIG+GLG  AR      CAP G NH EFF  C+  +  HFVA DYGH+D+LDD+   ++  + S   CKN
Sbjct:   45 LLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLY-SIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSNLKISTLIGIDPVDGTGKGKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFRECQGPA-WHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKN 266          
BLAST of CF838348 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.487e-39
Identity = 93/210 (44.29%), Postives = 129/210 (61.43%), Query Frame = 3
Query:  177 LIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPP--PSATNELNSAAEVAEWLPQGLQ---QNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG-------FGAVIGLDPVAGTS--KTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDD 764
            LII++P   G + V+LF+HGT LSN+ YS  F++IASHGFIVVAP+L+   PP  PS  +E++ AA VA W+P  LQ   Q      E ++  +A+ GHSRGG++AFAL+L +        F A+IG+DPVAG S    T                 VTVIG+GLG       +CAP   +H++F++ CK +S +HFV T YGHMD+L++
Sbjct:   63 LIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGFSNIKLDVTFSALIGVDPVAGRSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNHT---ISCAPNHVSHQQFYDECKENS-SHFVITKYGHMDMLNE 268          
The following BLAST results are available for this feature:
BLAST of CF838348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITSI1.622e-13189.81Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_CITUN3.060e-13089.06Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_ARATH1.319e-4038.65Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH1.722e-4041.78Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL2.487e-3944.29Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06F02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838348 ID=CF838348; Name=CF838348; organism=Citrus sinensis; type=EST; length=815bp
GCGGAAAATACCTCTCGATAATGGCAGCAATGGTGGACGCCAAGCCTGCA
GCTTCAGTGCAAGGCACTCCCCTTTTGGCTACGGCCACACTTCCGGTATT
TACAAGAGGAATTTATTCCACAAAACGCATCACGCTGGAGACATCATCTC
CATCCTCACCACCTCCTCCAAAGCCATTGATTATCGTCACGCCAGCCGGA
AAAGGAACTTTTAATGTCATCTTGTTCCTTCATGGCACTTCTCTCAGCAA
CAAAAGCTATTCGAAGATCTTTGACCACATAGCGTCCCATGGATTCATCG
TTGTTGCTCCTCAGCTATACACCAGTATCCCGCCACCAAGTGCAACCAAT
GAACTTAACAGCGCAGCAGAAGTCGCGGAGTGGCTACCCCAAGGCCTGCA
GCAAAATCTCCCAGAAAATACTGAAGCGAACGTAAGCTTGGTTGCTGTTA
TGGGGCACAGTCGCGGAGGACAAACGGCTTTTGCTCTATCACTACGCTAT
GGATTCGGTGCAGTAATAGGGCTAGACCCCGTTGCTGGGACTAGTAAAAC
CACTGGACTTGATCCCTCGATTCTTTCTTTCGACTCTTTCGACTTCTCGA
TTCCCGTTACTGTGATTGGCACCGGACTCGGCGGCGTGGCTAGGTGCATC
ACCGCTTGTGCACCTGAAGGAGCAAACCATGAAGAGTTTTTCAACAGATG
CAAGAACTCTTCTCGTGCTCATTTTGTTGCTACAGATTATGGTCACATGG
ACATTTTGGATGATAATCCATCAGACGTAAAGTCTTGGGCGCTTTCGAAA
TACTTTTGCAAAAAT
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