CF838392

Overview
NameCF838392
Unique NameCF838392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838392 vs. ExPASy Swiss-Prot
Match: UFC1_DICDI (Probable Ufm1-conjugating enzyme 1 OS=Dictyostelium discoideum GN=ufc1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.783e-55
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = 3
Query:  270 WYLRNLLKY*FDLQCDIPVTYPATDPELELPQLDGKTEKMYRGGKICLTVHFKPLWAKNCPRLGIAHALCLGLAPWLASEIPILADSGMI 539
            WY+ N  KY FDL+ D+PVTYP T PE+ +P+LDGKTEKMYRGGKICLT+HFKPLW++N P  GIAHAL LGLAPWLA+E+P L D+G+I
Sbjct:   69 WYIYNFKKYEFDLEFDMPVTYPETAPEIAIPELDGKTEKMYRGGKICLTIHFKPLWSRNVPHFGIAHALALGLAPWLAAEVPHLVDNGII 158          

HSP 2 Score: 90.1225 bits (222), Expect = 1.783e-55
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 2
Query:   65 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYQALIAYTLMNKSNDNNWFRISAVNPEGTRWTGK 265
            D +TK T+ QIPLL+ KAGPRDG  W  RLKEEYQALI Y  +NK  DN+WF I + NP GTRW GK
Sbjct:    2 DNHTKQTVQQIPLLTVKAGPRDGDKWIDRLKEEYQALIKYVEINKKADNDWFNIES-NPLGTRWQGK 67          
BLAST of CF838392 vs. ExPASy Swiss-Prot
Match: UFC1_HUMAN (Ufm1-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 1.593e-50
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 3
Query:  270 WYLRNLLKY*FDLQCDIPVTYPATDPELELPQLDGKTEKMYRGGKICLTVHFKPLWAKNCPRLGIAHALCLGLAPWLASEIPILADSGMI 539
            WY+ +LLKY FD++ DIP+TYP T PE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+ G+AH + LGL PWLA EIP L   G+I
Sbjct:   70 WYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVI 159          

HSP 2 Score: 82.4185 bits (202), Expect = 1.593e-50
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 2
Query:   65 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYQALIAYTLMNKSNDNNWFRISAVNPEGTRWTGK 265
            D  T+  +++IP+L T AGPRD   W QRLKEEYQ+LI Y   NK+ DN+WFR+ + N EGTRW GK
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGK 68          
BLAST of CF838392 vs. ExPASy Swiss-Prot
Match: UFC1_BOVIN (Ufm1-conjugating enzyme 1 OS=Bos taurus GN=UFC1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.593e-50
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 3
Query:  270 WYLRNLLKY*FDLQCDIPVTYPATDPELELPQLDGKTEKMYRGGKICLTVHFKPLWAKNCPRLGIAHALCLGLAPWLASEIPILADSGMI 539
            WY+ +LLKY FD++ DIP+TYP T PE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+ G+AH + LGL PWLA EIP L   G+I
Sbjct:   70 WYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVI 159          

HSP 2 Score: 82.4185 bits (202), Expect = 1.593e-50
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 2
Query:   65 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYQALIAYTLMNKSNDNNWFRISAVNPEGTRWTGK 265
            D  T+  +++IP+L T AGPRD   W QRLKEEYQ+LI Y   NK+ DN+WFR+ + N EGTRW GK
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGK 68          
BLAST of CF838392 vs. ExPASy Swiss-Prot
Match: UFC1_MOUSE (Ufm1-conjugating enzyme 1 OS=Mus musculus GN=Ufc1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.812e-50
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 3
Query:  270 WYLRNLLKY*FDLQCDIPVTYPATDPELELPQLDGKTEKMYRGGKICLTVHFKPLWAKNCPRLGIAHALCLGLAPWLASEIPILADSGMI 539
            WY+ + LKY FD++ +IP+TYP T PE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+ G+AH + LGL PWLA E+P L   G+I
Sbjct:   70 WYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVI 159          

HSP 2 Score: 83.5741 bits (205), Expect = 7.812e-50
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 2
Query:   65 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYQALIAYTLMNKSNDNNWFRISAVNPEGTRWTGK 265
            D  T+  +++IP+L T AGPRD   W QRLKEEYQ+LI Y   NK++DN+WFR+ + N EGTRW GK
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNSDNDWFRLES-NKEGTRWFGK 68          
BLAST of CF838392 vs. ExPASy Swiss-Prot
Match: UFC1_RAT (Ufm1-conjugating enzyme 1 OS=Rattus norvegicus GN=Ufc1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.730e-49
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 3
Query:  270 WYLRNLLKY*FDLQCDIPVTYPATDPELELPQLDGKTEKMYRGGKICLTVHFKPLWAKNCPRLGIAHALCLGLAPWLASEIPILADSGMI 539
            WY+ + LKY FD++ +IP+TYP T PE+ +P+LDGKT KMYRGGKICLT HFKPLWA+N P+ G+AH + LGL PWLA E+P L   G+I
Sbjct:   70 WYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVI 159          

HSP 2 Score: 82.4185 bits (202), Expect = 1.730e-49
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 2
Query:   65 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYQALIAYTLMNKSNDNNWFRISAVNPEGTRWTGK 265
            D  T+  +++IP+L T AGPRD   W QRLKEEYQ+LI Y   NK+ DN+WFR+ + N EGTRW GK
Sbjct:    3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGK 68          
BLAST of CF838392 vs. ExPASy Swiss-Prot
Match: UFC1_CAEEL (Probable Ufm1-conjugating enzyme OS=Caenorhabditis elegans GN=C40H1.6 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 8.491e-49
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 3
Query:  270 WYLRNLLKY*FDLQCDIPVTYPATDPELELPQLDGKTEKMYRGGKICLTVHFKPLWAKNCPRLGIAHALCLGLAPWLASEIPILADSGMI 539
            WY  N++KY FD++ DIP+TYP T PE+ LP+LDGKT KMYRGGKICL+ HFKPLWA+N P+ GIAHA  LGL PW+A EIP L + G+I
Sbjct:   69 WYFHNMVKYEFDVEFDIPITYPVTAPEIALPELDGKTAKMYRGGKICLSEHFKPLWARNTPKFGIAHAFALGLGPWMAVEIPDLIEKGLI 158          

HSP 2 Score: 75.485 bits (184), Expect = 8.491e-49
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 2
Query:   65 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYQALIAYTLMNKSNDNNWFRISAVNPEGTRWTGK 265
            D  TKS+L  IPL  TKA PRDG  W +RLKEEY+A+IA    NK  D +WF++ + N  GT+W GK
Sbjct:    2 DDATKSSLKAIPLCKTKASPRDGDLWIERLKEEYEAIIAAVQNNKDCDRDWFQLES-NERGTKWFGK 67          
The following BLAST results are available for this feature:
BLAST of CF838392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UFC1_DICDI1.783e-5570.00Probable Ufm1-conjugating enzyme 1 OS=Dictyosteliu... [more]
UFC1_HUMAN1.593e-5065.56Ufm1-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 ... [more]
UFC1_BOVIN1.593e-5065.56Ufm1-conjugating enzyme 1 OS=Bos taurus GN=UFC1 PE... [more]
UFC1_MOUSE7.812e-5062.22Ufm1-conjugating enzyme 1 OS=Mus musculus GN=Ufc1 ... [more]
UFC1_RAT1.730e-4962.22Ufm1-conjugating enzyme 1 OS=Rattus norvegicus GN=... [more]
UFC1_CAEEL8.491e-4965.56Probable Ufm1-conjugating enzyme OS=Caenorhabditis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06H01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838392 ID=CF838392; Name=CF838392; organism=Citrus sinensis; type=EST; length=541bp
CCGTTTAATCGGAATTCACAATTGGCAAAATCTAGGGCTACGGTTAGCAA
AGATGGAGGGATGGGACCCGAACACGAAATCGACGCTGACCCAGATCCCG
CTTTTGTCAACGAAAGCCGGTCCCAGAGACGGTGCGGCGTGGACGCAGCG
GCTTAAAGAGGAGTACCAGGCTTTGATCGCCTATACACTGATGAATAAGT
CCAACGACAACAATTGGTTCCGCATCTCAGCGGTCAATCCGGAGGGGACA
CGTTGGACGGGCAAGTCGCTGGTACCTTCGCAACCTCTTAAAGTACTAAT
TCGATCTCCAGTGTGATATTCCGGTTACGTACCCCGCCACGGACCCCGAG
CTTGAGCTCCCCCAACTCGATGGCAAGACCGAGAAGATGTACCGAGGAGG
GAAGATTTGCTTGACCGTACATTTCAAGCCACTTTGGGCTAAAAACTGTC
CTAGGCTTGGTATAGCACATGCACTTTGTCTTGGTCTTGCTCCATGGCTT
GCATCAGAGATTCCCATTCTTGCTGATTCCGGAATGATTAA
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