CF838423

Overview
NameCF838423
Unique NameCF838423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838423_ssr45 microsatellite CF838423_ssr45:45..54. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838423_ssr55 microsatellite CF838423_ssr55:55..78. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838423_ssr104 microsatellite CF838423_ssr104:104..113. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838423_ssr54 microsatellite CF838423_ssr54:54..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11725 contig Csv1_Contig11725:3..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: SMT2_ARATH (24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2)

HSP 1 Score: 428.328 bits (1100), Expect = 2.492e-119
Identity = 201/231 (87.01%), Postives = 220/231 (95.24%), Query Frame = 1
Query:  136 MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT 825
            MDSL LF TGAL+A G+YWF+CVLGPAE+KGKRAV+LSGGSISAE+V+DNYK+YW FF+RPKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH+DATRLHEEMAVDLI VK G +ILDVGCGVGGPMRAIA+HSRANVVGITINEYQVNRARLHNKKAGLD+LCEVVCGNFL+MPF+DN FDGAYSIEATCHAPKLE+VYAE++RVLKPGS+YVSYEWVT
Sbjct:    1 MDSLTLFFTGALVAVGIYWFLCVLGPAERKGKRAVDLSGGSISAEKVQDNYKQYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHKDATRLHEEMAVDLIQVKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDALCEVVCGNFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVT 231          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: SMT3B_ARATH (24-methylenesterol C-methyltransferase 3 OS=Arabidopsis thaliana GN=SMT3 PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 5.033e-112
Identity = 185/231 (80.09%), Postives = 211/231 (91.34%), Query Frame = 1
Query:  136 MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT 825
            MDS+AL+CT  L+AG +YWF+CVLGPAE+KGKRA +LSGGSISAE+V+DNY +YW FF++PKE  + EKVPDFVDTFYNLVTDIYEWGWGQSFHFSP +PGKS +DATR+HEEMAVDLI VK G +ILD GCGVGGPMRAIAAHS+A V GITINEYQV RA+LHNKKAGLDSLC VVCGNFLKMPF++N FDGAYSIEATCHAPKLE+VY+E+FRV+KPGSL+VSYEWVT
Sbjct:    1 MDSVALYCTAGLIAGAVYWFICVLGPAERKGKRASDLSGGSISAEKVKDNYNQYWSFFRKPKEIESAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPHVPGKSDKDATRIHEEMAVDLIKVKPGQKILDAGCGVGGPMRAIAAHSKAQVTGITINEYQVQRAKLHNKKAGLDSLCNVVCGNFLKMPFDENTFDGAYSIEATCHAPKLEEVYSEIFRVMKPGSLFVSYEWVT 231          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: SMT2_ORYSJ (24-methylenesterol C-methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Smt2-1 PE=2 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 9.216e-98
Identity = 167/219 (76.26%), Postives = 187/219 (85.39%), Query Frame = 1
Query:  184 LYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-----TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT 825
            +YWFV V+G AE KGKRAV+L  GSI+ ++V+D Y +YW FF+RPKET     + EKVP FVDTFYNLVTDIYEWGWGQSFHFSPS+PG+SHR+ATR+HEE   DL+  K G R+LDVGCGVGGPMRAIAAHS +NVVGITINEYQVNRAR HN+KAGLDS CEVVCGNFL MPF D  FDGAYSIEATCHAP+L+DVY EVFRVLKPG LYVSYEWVT
Sbjct:   18 VYWFVWVMGAAEVKGKRAVDLKMGSITNDKVKDKYTQYWSFFRRPKETATTEASAEKVPAFVDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLKPGGLYVSYEWVT 236          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.404e-47
Identity = 87/193 (45.08%), Postives = 123/193 (63.73%), Query Frame = 1
Query:  250 GGSISAEEVE---DNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 819
            GG I+ +EV+   D Y++Y  ++   +E  K    D V+ +Y+L T  YE+GWG+SFHF+    G+S R++ + HE      + VK G ++LDVGCG+GGP+R IA  S A+V G+  NEYQ+ R +  N+ AG+   C+ V  +F+KMPF DN FD  Y+IEATCHAP     Y E++RVLKPG  +  YEW
Sbjct:   14 GGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEW 206          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.306e-45
Identity = 83/193 (43.01%), Postives = 119/193 (61.66%), Query Frame = 1
Query:  250 GGSISAEEV---EDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 819
            GG I   +V    + Y++Y  F    +E  K    D V+ +Y+L T  YE+GWG+SFHF+    G+S R++ + HE      + ++ G ++LDVGCG+GGP+R IA  S + V G+  NEYQ+ R +  N+ AG+D  C  V  +F+KMPF +N FD  Y+IEATCHAP     Y E++RVLKPG  + +YEW
Sbjct:    8 GGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEW 200          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: ERG6_CANGA (Sterol 24-C-methyltransferase OS=Candida glabrata GN=ERG6 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.182e-44
Identity = 88/206 (42.72%), Postives = 123/206 (59.71%), Query Frame = 1
Query:  214 AEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVD---TFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 822
            AE +      LS    +  E    Y  +W   K  KE    ++ D+ +   ++YN+VTD YE+GWG SFHFS    G++ + A   HE+    +  +K GD +LDVGCGVGGP R IA  +  N++G+  N+YQ+ +A+ + KK  L    + V G+F+ M FE N FD  Y+IEATCHAPKLE VY E+++VLKPG  +  YEWV
Sbjct:   22 AESRTGLTALLSKNRNAQREAVSKYLRHWDG-KTDKEAEDRRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGENFQAAMARHEQYLAYMAGIKKGDLVLDVGCGVGGPARTIARFTGCNIIGLNNNDYQIQKAKYYAKKYNLQDHMDFVKGDFMNMEFEPNSFDKVYAIEATCHAPKLEGVYGEIYKVLKPGGTFAVYEWV 226          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: ERG6_MAGGR (Sterol 24-C-methyltransferase OS=Magnaporthe grisea GN=ERG6 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.634e-44
Identity = 92/189 (48.68%), Postives = 117/189 (61.90%), Query Frame = 1
Query:  280 DNYKEYWKFFKRPKETTK---EKVPDFVDT---FYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS--LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 822
            D Y  +W       ETTK   E+  D+      +YNLVTD YE+GWGQSFHF    PG++   A   +E      I +K G ++LD+GCGVGGP R IA  + AN+ GITINEYQV RAR + +  G  +    + V G+F+ +PFE   FD  YSIEAT HAPKLEDVY ++F VLKPG ++  YEWV
Sbjct:   55 DQYFRHWDGKTAKTETTKVREERKADYATLTRQYYNLVTDFYEYGWGQSFHFCTFAPGETFASAITRYEHTLAHRIGIKKGMKVLDIGCGVGGPARQIAKFTGANITGITINEYQVERARRYAEMEGYGAGEQLKFVQGDFMALPFEKETFDAVYSIEATVHAPKLEDVYKQIFNVLKPGGIFGLYEWV 243          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: SMT1_DICDI (Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.662e-44
Identity = 85/189 (44.97%), Postives = 117/189 (61.90%), Query Frame = 1
Query:  268 EEVEDNYKEYWKFFK----RPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 822
            ++V+D    Y + FK    +  +  K      V+TFY+L TD YE+GWGQSFHF+     +S   +   HE      + +  G +++D+GCGVGGPMR IA  S ANVVG+  NEYQ+ R +  N+ AGL  LC  +  +F+ +P EDN +D AY IEATCHAP L  +Y EVFR++KPG L+  YEW+
Sbjct:   30 DKVDDTLNGYKELFKGNDDKAIQARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFMHVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYEWI 218          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: ERG6_YEAST (Sterol 24-C-methyltransferase OS=Saccharomyces cerevisiae GN=ERG6 PE=1 SV=4)

HSP 1 Score: 175.637 bits (444), Expect = 2.912e-43
Identity = 85/195 (43.59%), Postives = 119/195 (61.03%), Query Frame = 1
Query:  244 LSGGSISAEEVEDNYKEYW--KFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 822
            +S  + + +E    Y   W  +  K  +E   E   +   ++YN+VTD YE+GWG SFHFS    G+S   +   HE        ++ GD +LDVGCGVGGP R IA  +  NV+G+  N+YQ+ +A+ + KK  L    + V G+F+KM FE+N FD  Y+IEATCHAPKLE VY+E+++VLKPG  +  YEWV
Sbjct:   32 MSKNNSAQKEAVQKYLRNWDGRTDKDAEERRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQRGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDFMKMDFEENTFDKVYAIEATCHAPKLEGVYSEIYKVLKPGGTFAVYEWV 226          
BLAST of CF838423 vs. ExPASy Swiss-Prot
Match: ERG6_SCHPO (Sterol 24-C-methyltransferase OS=Schizosaccharomyces pombe GN=SPBC16E9.05 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.472e-43
Identity = 90/211 (42.65%), Postives = 128/211 (60.66%), Query Frame = 1
Query:  226 GKRAVNLSG-GSISAEEVEDNYK---EYWKFFKRPKETTKEK--------VPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 822
            GK A   +G  +I++++V++  +   EY++F+ R  E   E+            V+++Y+L TD+YE+GW QSFHFS    G++   +   HE      + +K G R+LDVGCGVGGP R I   +  N+VG+  N+YQ++R   +  K  LD     V G+F+ MPFEDN FD  Y+IEAT HAP LE VY E+FRVLKPG ++  YEWV
Sbjct:   21 GKAAEKKTGLAAIASKDVDEQSRKLQEYFEFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYGEIFRVLKPGGVFGVYEWV 231          
The following BLAST results are available for this feature:
BLAST of CF838423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SMT2_ARATH2.492e-11987.0124-methylenesterol C-methyltransferase 2 OS=Arabid... [more]
SMT3B_ARATH5.033e-11280.0924-methylenesterol C-methyltransferase 3 OS=Arabid... [more]
SMT2_ORYSJ9.216e-9876.2624-methylenesterol C-methyltransferase 2 OS=Oryza ... [more]
SMT1_ORYSJ7.404e-4745.08Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
SMT1_ARATH5.306e-4543.01Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
ERG6_CANGA1.182e-4442.72Sterol 24-C-methyltransferase OS=Candida glabrata ... [more]
ERG6_MAGGR2.634e-4448.68Sterol 24-C-methyltransferase OS=Magnaporthe grise... [more]
SMT1_DICDI7.662e-4444.97Probable cycloartenol-C-24-methyltransferase 1 OS=... [more]
ERG6_YEAST2.912e-4343.59Sterol 24-C-methyltransferase OS=Saccharomyces cer... [more]
ERG6_SCHPO8.472e-4342.65Sterol 24-C-methyltransferase OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838423 ID=CF838423; Name=CF838423; organism=Citrus sinensis; type=EST; length=826bp
CGGCGCTCAGAATAGTGGAGCCGCCCGAGTCCGCCTTTGCTTTTTCTCTC
TCTCACACACACACACACACACACACACAACACAGTCACGCTCTCGCACT
CCATCTCTCTCTCCTTCTAACTTTTTCAAGTCTCAATGGATTCTCTCGCT
CTCTTTTGCACCGGCGCTCTCCTTGCCGGTGGCCTCTACTGGTTTGTCTG
CGTACTCGGCCCCGCCGAACAAAAGGGCAAGCGCGCCGTCAACCTCTCCG
GCGGCTCGATCTCCGCCGAGGAAGTCGAAGACAATTATAAAGAGTACTGG
AAGTTCTTTAAACGCCCGAAGGAGACAACCAAGGAGAAGGTTCCAGATTT
CGTCGACACGTTTTACAACTTAGTCACAGACATTTACGAGTGGGGGTGGG
GCCAGTCCTTCCACTTCTCCCCCTCTATCCCCGGGAAATCCCACCGTGAC
GCCACGCGCCTCCACGAGGAGATGGCCGTCGATCTCATTGACGTCAAGGC
CGGAGACCGCATTCTCGACGTCGGATGCGGGGTCGGCGGTCCCATGCGTG
CCATCGCCGCCCACTCGCGTGCCAATGTCGTCGGCATCACAATCAACGAG
TATCAAGTGAATCGTGCTCGTCTGCACAACAAGAAGGCGGGATTAGATTC
TCTCTGCGAAGTAGTATGCGGAAACTTCCTAAAGATGCCGTTTGAAGACA
ACCACTTCGACGGCGCGTACTCAATCGAAGCGACATGTCACGCGCCGAAG
CTGGAGGACGTGTACGCTGAGGTCTTTAGGGTTTTGAAGCCCGGATCTCT
ATACGTGTCGTACGAGTGGGTCACGA
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