CF838431
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.248e-72 Identity = 142/172 (82.56%), Postives = 144/172 (83.72%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGG--MVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXXXPANLDGQG 510 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAA LGG +V TASGVPYYYPPMGQP AGPGGMMIGRPA+DP GVYVQPPSQAWQSVWQT NLDGQG Sbjct: 66 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQP---AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQG 234
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 1.865e-68 Identity = 136/175 (77.71%), Postives = 140/175 (80.00%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE-----AAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXXXPANLDGQG 510 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E A G GGMV ASGVPYYYPPMGQP A PGGMMIGRPA+DP+GVY QPPSQAWQSVWQ A NLD QG Sbjct: 79 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQP---AVPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHGNLDSQG 250
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.624e-46 Identity = 95/146 (65.07%), Postives = 110/146 (75.34%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTP 438 LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE G G ATA+G PY Y P G T G GM++G P P Y+ P +WQ P Sbjct: 71 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYPYGYLPPG--TAPIGNPGMVMGNPGAYPPNPYMGQP------MWQQP 208
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 6.041e-43 Identity = 95/150 (63.33%), Postives = 110/150 (73.33%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAG---LGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPA 441 LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE G G + A A+G PY Y P G T G GM++G P G Y P Q +WQ A Sbjct: 81 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAG--TAPIGNPGMVMGNPG----GAYPPNPYMG-QPMWQQQA 223
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2) HSP 1 Score: 164.466 bits (415), Expect = 6.251e-40 Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGL-GGMVGATASGVPYYY 309 LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E G+ G + + PYYY Sbjct: 77 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGTIPSVVGSPPYYY 180
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.667e-33 Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE-IKDEAAGLGGMVGATASGVP-YYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAW 417 LPLARIKKIMKAD DV M+SAEAPI+FAKACE+FI++LT+RSWL AEENKR TLQK+DI+ A+ + +DFL+D+VP+DE I G M GVP YYYPP G+++G P V +G+Y PSQAW Sbjct: 55 LPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDESIATADPGFVAMPHPDGGGVPQYYYPP-----------GVVMGTPMVG-SGMYA--PSQAW 181
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32 Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 348 LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K T A V YY+ QPT G Sbjct: 43 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32 Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 348 LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K T A V YY+ QPT G Sbjct: 43 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32 Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 348 LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K T A V YY+ QPT G Sbjct: 43 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32 Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 348 LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K T A V YY+ QPT G Sbjct: 43 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159 The following BLAST results are available for this feature:
BLAST of CF838431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838431 ID=CF838431; Name=CF838431; organism=Citrus sinensis; type=EST; length=792bpback to top |