CF838431

Overview
NameCF838431
Unique NameCF838431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3480 contig Csv1_Contig3480:275..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.248e-72
Identity = 142/172 (82.56%), Postives = 144/172 (83.72%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGG--MVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXXXPANLDGQG 510
            LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAA LGG  +V  TASGVPYYYPPMGQP   AGPGGMMIGRPA+DP GVYVQPPSQAWQSVWQT                   NLDGQG
Sbjct:   66 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQP---AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQG 234          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.865e-68
Identity = 136/175 (77.71%), Postives = 140/175 (80.00%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE-----AAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXXXPANLDGQG 510
            LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E     A G GGMV   ASGVPYYYPPMGQP   A PGGMMIGRPA+DP+GVY QPPSQAWQSVWQ  A                 NLD QG
Sbjct:   79 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQP---AVPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHGNLDSQG 250          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.624e-46
Identity = 95/146 (65.07%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTP 438
            LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G  G   ATA+G PY Y P G  T   G  GM++G P   P   Y+  P      +WQ P
Sbjct:   71 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYPYGYLPPG--TAPIGNPGMVMGNPGAYPPNPYMGQP------MWQQP 208          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.041e-43
Identity = 95/150 (63.33%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAG---LGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPA 441
            LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G    G +  A A+G PY Y P G  T   G  GM++G P     G Y   P    Q +WQ  A
Sbjct:   81 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAG--TAPIGNPGMVMGNPG----GAYPPNPYMG-QPMWQQQA 223          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.251e-40
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGL-GGMVGATASGVPYYY 309
            LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E  G+  G + +     PYYY
Sbjct:   77 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGTIPSVVGSPPYYY 180          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.667e-33
Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE-IKDEAAGLGGMVGATASGVP-YYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAW 417
            LPLARIKKIMKAD DV M+SAEAPI+FAKACE+FI++LT+RSWL AEENKR TLQK+DI+ A+  +  +DFL+D+VP+DE I     G   M      GVP YYYPP           G+++G P V  +G+Y   PSQAW
Sbjct:   55 LPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDESIATADPGFVAMPHPDGGGVPQYYYPP-----------GVVMGTPMVG-SGMYA--PSQAW 181          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32
Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 348
            LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   43 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32
Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 348
            LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   43 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32
Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 348
            LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   43 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of CF838431 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32
Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 348
            LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   43 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
The following BLAST results are available for this feature:
BLAST of CF838431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC1_ARATH1.248e-7282.56Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC4_ARATH1.865e-6877.71Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC3_ARATH7.624e-4665.07Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC9_ARATH6.041e-4363.33Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC2_ARATH6.251e-4075.00Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC6_ARATH5.667e-3356.03Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
NFYC_RAT6.266e-3261.54Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_MOUSE6.266e-3261.54Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN6.266e-3261.54Nuclear transcription factor Y subunit gamma OS=Ho... [more]
NFYC_BOVIN6.266e-3261.54Nuclear transcription factor Y subunit gamma OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838431 ID=CF838431; Name=CF838431; organism=Citrus sinensis; type=EST; length=792bp
CTGCCGCTCGCCCGCATCAAGAAAATCATGAAGGCCGACGAGGACGTTCG
CATGATCTCCGCCGAGGCCCCGATTCTGTTCGCCAAGGCCTGCGAGTTGT
TCATCCTCGAGCTCACGATCCGCTCGTGGCTCCACGCCGAGGAGAACAAG
CGCAGGACTCTACAGAAGAACGACATCGCGGCCGCCATCACCAGGACCGA
CATCTTCGACTTCTTGGTCGATATTGTGCCTAGGGATGAGATTAAGGACG
AGGCTGCCGGCTTGGGCGGCATGGTGGGGGCCACTGCCAGTGGGGTTCCG
TATTATTATCCTCCAATGGGGCAGCCCACTGGGACTGCTGGCCCCGGTGG
GATGATGATTGGCCGGCCGGCTGTCGATCCTACTGGTGTTTACGTGCAGC
CGCCTAGTCAGGCTTGGCAGTCCGTTTGGCAGACGCCCGCGGGGACTGGG
GACGACGGCTCTTATGGCAGTGGTGGGAGCGGGGGACCTGCCAATCTTGA
TGGTCAAGGCTAGGTTAAACAAAAACAACTAATATGCAGATGTTATGCTG
CTGTGTGATGCAGTAGAAAGGCATTGGAACCCCTGCCGATGCTACATGGA
ATTTTGCTTGCATCTGATTTATGAGAACACTTGTCTGTAATGTTTANGAA
AACCAGTTCTAAATGTGATGACTTTAATCGGAACTCGTTGGGACTTTTTA
ACTTGATTTCATGCAGCAAAAACTGTAGCTGCAGTGACTTGCCTAATTAT
ATCTAATGGGCAGTTCTGGATTTGTGAAAAAAAAAAAAAAAA
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