CF838479

Overview
NameCF838479
Unique NameCF838479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838479 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  416 VECKDRKSMPVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLR 703
            +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS   R AN +GFMK +P+  CA+ LR
Sbjct:   57 LECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CF838479 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = -3
Query:  398 VECKDRKSMPVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 703
            V+C+           E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:   36 VDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CF838479 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = -3
Query:  419 VECKDRKSMPVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVL 703
            ++C++  +    +S EG TD  G YK+ V+ DH++ +C+  +V SP+ DCK    G E++R+  +   GI    R+AN + FMKAE + GC E L
Sbjct:   57 LQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CF838479 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  398 VECKDRKSMPVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLRLYQEED 703
            +ECK   +  +  + +G TD+TGTY I + + H++ +C  VLV+SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   65 LECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CF838479 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = -3
Query:  410 VECKDRKSMPVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFE-TRYANSMGFMKAEPMSGCAEVLRLY 703
            V+C+           E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:   36 VDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CF838479 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = -3
Query:  395 VECKDRKSMPVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAP---GRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 703
            +EC++  +    +  E  TD  G Y I V+ D +D +C+  LV SP ++C  V+     ++ ++V LTS NG + + R AN++GFM+ EP+  C EVL+     DV
Sbjct:   60 LECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
The following BLAST results are available for this feature:
BLAST of CF838479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
OLEE1_BETVE3.947e-1639.39Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
PHLB_PHLPR1.270e-1437.86Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LAT52_SOLLC1.270e-1437.89Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PSC13_MAIZE4.825e-1438.24Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
LOLB_LOLPR1.833e-1337.37Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL6.967e-1335.85Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838479 ID=CF838479; Name=CF838479; organism=Citrus sinensis; type=EST; length=705bp
CCGCTAGAGTGTTTTTTTGTTTTTTTTTTTTAAACTAAATCACCCTGGGG
CCCTCAATTCCAGAGTTTTCGGCTAGTGTTTTAGAACACTTAGAATTACA
AGAGAAAAAGTAGCGGACTAGCTGAAGGCCATAGCTTCAAAGGCTGGAAC
AGATTTATTGGGAAAATAAATCAGGCATTACTAGCGAGAAAACGCATCTC
AAAGCTAGAAGCACCAGCATATAAATAAATTAATAGAGTACACGTCCTTT
AACAACAAATTAAGAATTCTCTAAACATAGAAACAACACAGCCATCCAGG
CACTACTAATAGAAGAGACAGTATGATAGCTGGGCCAACACAAAGCTTAA
ACAAATGGAAAGCGATAGAAAAAACCATGCCACACCATTCTCTACACATC
CTCCTCCTGATATAGCCTGAGAACCTCAGCACAGCCAGACATGGGCTCTG
CCTTCATGAAGCCCATTGAATTGGCATATCGGGTTTCAAAAGAAATGCCG
TTGTAACTGGTCAAGATCACACGGGAACGCTCACGCCCTGGGGCAACTGT
TTTGCAGTCATTCTGGGGGCTGCTAACGAGGACAGCATCGCAAAGTTGAT
CCTGATGGTCTTCTGAAACGAGGATCTTATATGTCCCAGTGGAGTCTGTT
TTCCCTTCCCTGCTATATACTACTGGCATTGACTTCCGGTCTTTGCATTC
AACCT
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