CF838488

Overview
NameCF838488
Unique NameCF838488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9318 contig Csv1_Contig9318:24..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2_RAT (Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.884e-45
Identity = 95/189 (50.26%), Postives = 118/189 (62.43%), Query Frame = 2
Query:  281 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            ++ F++ L QL V++ K                       LPE +NSPY  + FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ YPGAFNMTTG
Sbjct:    1 MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEKIPG-----ESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVYPGAFNMTTG 184          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2_HUMAN (Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.198e-45
Identity = 94/189 (49.74%), Postives = 118/189 (62.43%), Query Frame = 2
Query:  281 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            +T F++ L QL +++ K                       LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ YPGAFN+TTG
Sbjct:    1 MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKIPG-----ESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTG 184          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2_BOVIN (Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.198e-45
Identity = 94/186 (50.54%), Postives = 119/186 (63.98%), Query Frame = 2
Query:  290 FKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            F++ L QL V++ K                       LPE +NSPY    FP YAE I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HLFDID+PGKITF ES++L+ G++ ++ DT   R+G+GICYDIRF ELA IY  RG  L+ YPGAFN+TTG
Sbjct:    4 FRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEKIP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHLFDIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNLTTG 184          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2_MOUSE (Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.595e-44
Identity = 93/189 (49.21%), Postives = 117/189 (61.90%), Query Frame = 2
Query:  281 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            ++ F++ L QL V++ K                       LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF ELA IY  RG  L+ YPGAFN+TTG
Sbjct:    1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPG-----ESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTG 184          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2A_XENLA (Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.916e-44
Identity = 92/189 (48.68%), Postives = 116/189 (61.38%), Query Frame = 2
Query:  281 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            + KFK+ L Q  V+  K                       LPE +NSPY    FP YAE I        ST +LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYDIRF ELA IY  +G  L+ YPGAFNMTTG
Sbjct:    1 MAKFKLSLVQFLVSPVKSDNLNRACKLIKEAAQKGAQIVALPECFNSPYGTTYFPEYAEKIPG-----ESTELLSQVAKECGIYLIGGSIPEEDCGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDIRFAELAQIYANKGCQLLVYPGAFNMTTG 184          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: YAUB_SCHPO (UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe GN=SPAC26A3.11 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.929e-43
Identity = 93/186 (50.00%), Postives = 116/186 (62.37%), Query Frame = 2
Query:  290 FKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            F++GL QL+ T DK                       LPEI+NSPY    F  YAE I+   ++SPS   LS +A+  K  + GGSIPER   +LYNT  VF   GKLIA HRKIHLFDIDIPG ++F ES SL+ G+  T+VDT+ G+ G+GICYDIRF ELAMI    G  ++ YPGAFN++TG
Sbjct:   44 FRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIE---ESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELAMIAARNGCSVMIYPGAFNLSTG 226          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2B_XENLA (Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.131e-43
Identity = 89/189 (47.09%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  281 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            + KF++ L Q  V+  K                       LPE +NSPY    FP YAE I        ST +LS+VA+   I ++GGSIPE    + YNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYD+RF ELA IY  +G  L+ YPGAFNMTTG
Sbjct:    1 MAKFRLSLVQFLVSPVKSDNLNKACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEKIPG-----ESTELLSQVAKECGIYLIGGSIPEEDSGKFYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDMRFAELAQIYANKGCQLLVYPGAFNMTTG 184          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2_XENTR (Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.701e-43
Identity = 89/189 (47.09%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  281 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            + KF++ L Q  V+  K                       LPE +NSPY    FP YAE I        ST  LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF ELA +Y  +G  L+ YPGAFNMTTG
Sbjct:    1 MAKFRLSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEKIPG-----ESTERLSQVAKECGIYLIGGSIPEEDSGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFETPYCKVGVGICYDIRFAELAQLYSKKGCQLLVYPGAFNMTTG 184          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2_PONAB (Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.143e-42
Identity = 92/189 (48.68%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  281 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            +  F++ L QL +++                         LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDID+PGKITF ESK+L+ G++    DT   R+G+GICYD+RF ELA IY  RG  L+ YPGAFN+TTG
Sbjct:    1 MASFRLALIQLQISSINSDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFPEYAEKIPG-----ESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFCTFDT-YCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTG 183          
BLAST of CF838488 vs. ExPASy Swiss-Prot
Match: NIT2_DANRE (Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.493e-42
Identity = 90/189 (47.62%), Postives = 116/189 (61.38%), Query Frame = 2
Query:  281 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTG 847
            ++KF++ + QL V+  K                       LPE +NSPY    F  YAE I        ST +LSE A+   I +VGGSIPE  G +LYNTC VFG DG L+  HRKIHLFDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF ELA IY  +G  L+ YPGAFNMTTG
Sbjct:    1 MSKFRLAVVQLHVSKIKADNLGRAQTLVKEAAGQGAKVVVLPECFNSPYGTGFFKEYAEKIPG-----ESTQVLSETAKKCGIYLVGGSIPEEDGGKLYNTCSVFGPDGTLLVTHRKIHLFDIDVPGKIRFQESETLSPGKSLSMFETPYCKVGVGICYDIRFAELAQIYAKKGCQLLVYPGAFNMTTG 184          
The following BLAST results are available for this feature:
BLAST of CF838488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIT2_RAT1.884e-4550.26Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE... [more]
NIT2_HUMAN4.198e-4549.74Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV... [more]
NIT2_BOVIN4.198e-4550.54Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1[more]
NIT2_MOUSE1.595e-4449.21Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV... [more]
NIT2A_XENLA7.916e-4448.68Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE... [more]
YAUB_SCHPO3.929e-4350.00UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces ... [more]
NIT2B_XENLA5.131e-4347.09Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE... [more]
NIT2_XENTR6.701e-4347.09Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 P... [more]
NIT2_PONAB1.143e-4248.68Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV... [more]
NIT2_DANRE1.493e-4247.62Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838488 ID=CF838488; Name=CF838488; organism=Citrus sinensis; type=EST; length=847bp
TTTGAATAGAGTAAAAAATAACAGGGAAGAAAGTGAAATGAAGTCAGCAG
TAGCAATCACTTCTAAGATTCATCTAAATCTCAATCTCAATCTCAGACGC
AATCACTTGTACTCCCCTCTCTCTCGTTCCATATTTCGAGGAAAGGCTAA
ACCCGTCTTCCAATCTCCTCCTCTCATCCGCACACACTCGTCAAATCCAA
ATCCAAATCCAATCATGGCTTCCTCTTTCAAGCCCGAACAAGCCAGGGCC
CCACCCGCCCTTCCCTTGCCCACTCCCCCCGTCACCAAGTTTAAGGTTGG
GCTTTGCCAATTGTCAGTAACGGCTGACAAAGAAAGGAACATCGCTCATG
CTCGTAGAGCCATTGAGGAGGCGGCTGAGAAAGGCGCCAAGCTCATTATT
TTGCCTGAGATTTGGAACAGTCCCTATTCGAATGACAGCTTCCCAGTTTA
TGCCGAAGACATTGATGCTGGTGGTGATGCATCTCCTTCCACCGCCATGC
TTTCTGAAGTTGCTCGTCTTCTGAAGATCACTATAGTTGGCGGCTCTATT
CCCGAACGTTCTGGGGATCGATTGTACAATACTTGCTGCGTCTTTGGTTC
TGATGGAAAACTGATAGCTAAGCACCGGAAGATACACCTTTTTGATATTG
ACATTCCCGGGAAGATTACCTTTATAGAATCAAAGTCCCTTACAGCAGGG
GAGACACCAACCATTGTGGACACAGATGTTGGGCGTATTGGAATAGGTAT
TTGTTATGATATTCGGTTTCAGGAACTGGCAATGATATATGGAGCCAGAG
GTGCTCACTTGATATGCTATCCTGGGGCATTTAACATGACTACTGGG
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