CF838504

Overview
NameCF838504
Unique NameCF838504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9701 contig Csv1_Contig9701:115..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838504 vs. ExPASy Swiss-Prot
Match: CLCF_ARATH (Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 4.613e-75
Identity = 156/288 (54.17%), Postives = 186/288 (64.58%), Query Frame = 2
Query:   35 SDERRPLRSSNQEDL-----ESAPDSPSNRTSTPSAAGGIKDLFKQLDRRFS--DRRITFK------------DPPLSHSRSSSFDH--------HNYVDARDS-------LTESAPPEWXXXXXXXXXXXXXXXXVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIXXXXXXXXXXXXXXXXXXVAGCFF 796
            +++R  LRS++ +++     E   D  S   +  S AGG++DLFK +DRRFS   RR++FK            +P  S + S++ +         H+  D  D        L +SAPPEW                VA FNKGVH+IHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEIL+QI+QS+S  RQG D +AG++P IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGF+LMMENNRER+I                  VAGCFF
Sbjct:   10 NEDRHLLRSTDGDEVGIGGGEGDLDVESQSPAIRSGAGGVRDLFKHIDRRFSLSGRRLSFKRMENIRVDRERHNPSSSSAFSAAGEEDGGGISNLHSVDDRNDEYGFDEEVLGDSAPPEWALLLIGCLIGVAAGICVAGFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILDQIRQSNSSQRQGLDFLAGIYPVIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFALMMENNRERRIALTAAGAASGIASGFNAAVAGCFF 297          
BLAST of CF838504 vs. ExPASy Swiss-Prot
Match: CLCE_ARATH (Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.531e-22
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  341 VAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQS---------SSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIXXXXXXXXXXXXXXXXXXVAGCFF 796
            V  FN  VH++ +++W G P+ GA+WLR   +   W R++L+P  GG++V        ILNQ+++S         SSLDR    + A + P +K + A VTLGTG SLGPEGPSV+IG S A G + +   + +                     VAGCFF
Sbjct:   91 VVLFNNCVHLLRDFSWDGIPDRGASWLREAPIGSNWLRVILVPTIGGLVV-------SILNQLRESAGKSTGDSHSSLDR----VKAVLRPFLKTVAACVTLGTGNSLGPEGPSVEIGASIAKGVNSLFNKSPQTGFSLLAAGSAAGISSGFNAAVAGCFF 240          
The following BLAST results are available for this feature:
BLAST of CF838504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CLCF_ARATH4.613e-7554.17Chloride channel protein CLC-f OS=Arabidopsis thal... [more]
CLCE_ARATH4.531e-2237.27Chloride channel protein CLC-e OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06M11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838504 ID=CF838504; Name=CF838504; organism=Citrus sinensis; type=EST; length=797bp
AAAATAATCAAATTTTCGAAAGCAGAAAATGTCAAGCGATGAGAGGCGTC
CGCTGAGATCGTCGAATCAAGAAGACTTAGAATCAGCTCCAGATTCGCCG
TCGAATAGAACCAGTACTCCTTCTGCGGCAGGCGGAATCAAAGATCTGTT
TAAGCAATTGGATCGTCGATTTTCCGATCGCCGCATAACTTTCAAAGATC
CTCCTCTTTCGCATTCGCGTTCGTCGTCTTTCGATCACCATAATTATGTG
GACGCCCGTGATTCTCTGACGGAAAGTGCCCCTCCTGAGTGGGCGTTGCT
TCTCATCGGTTGCCTTCTCGGCCTCGCATCCGGTTTGTGCGTTGCCTTCT
TCAATAAAGGGGTTCATATTATACATGAATGGGCCTGGGCGGGTACTCCG
AATGAGGGTGCTGCTTGGCTTCGATTACAGAGACTGGCGGACACTTGGCA
TCGGATTTTACTCATTCCAGTGACGGGAGGAGTAATTGTTGGAATGATGC
ATGGATTACTTGAGATATTAAATCAAATAAAGCAGTCGAGTTCTTTGGAT
AGACAAGGTTTTGATTTGGTTGCCGGAGTGTTTCCTACAATAAAGGCCAT
TCAGGCTGCTGTTACTTTAGGTACTGGTTGTTCTTTGGGTCCTGAAGGTC
CTAGTGTTGATATTGGAAAATCATGTGCCAATGGTTTTTCTTTAATGATG
GAAAATAACAGAGAAAGGAAAATTGCGCTTGTTGCAGCTGGTGCTGCTTC
TGGAATTGCTTCAGGTTTTAATGCGGCTGTAGCCGGTTGTTTCTTTG
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