CF838532

Overview
NameCF838532
Unique NameCF838532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_USTMA (Mitochondrial Rho GTPase 1 OS=Ustilago maydis GN=GEM1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.785e-52
Identity = 101/204 (49.51%), Postives = 134/204 (65.69%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            VRIV+ G+   GKS+LI +   + + A V  V+PP  LP +  P+ V   I+DT SS E R  L  ELRRA+ + + Y+   P + D + T+WLP +R L V VPVI+VG K+DLR  +    +LE  + P+M +F+E+ETC+ECSA   + V EVFY+AQKAVL+PT PL+D     LKP CV ALKRIF LCD D+DG LSD
Sbjct:    5 VRIVLAGDPDVGKSTLITSLVKEAYVAKVQKVVPPITLPPEVAPEAVVTKIVDTSSSPEHRANLEAELRRANVICIVYSISAPSSFDRIPTYWLPYIRSLGVNVPVILVGNKIDLRSGDVTNAALEDELAPVMAEFKEVETCVECSARIPLNVSEVFYFAQKAVLYPTAPLYDSREHVLKPACVDALKRIFRLCDSDKDGLLSD 208          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_CRYNE (Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans GN=GEM1 PE=3 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.261e-46
Identity = 92/203 (45.32%), Postives = 127/203 (62.56%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALS 770
            VRIV+ G+ G GKSS+I +   + F  NVP V+P   +P +  P+    +I+DT S+   R  L   + RA  + L Y+   P + D ++ +WLP  RR  + VPVI+VG K+DLR        LE    PIM++F+E+ET +ECSAL  + V EVFY+AQKAVLHPT PL+D     LKP+C+ ALKRIF + D D+DG L+
Sbjct:    7 VRIVLVGDDGVGKSSIITSLIKEAFVTNVPHVVPEVTIPPEITPENFTTSIVDTSSNPRSRPHLLSSISRAHVICLVYSIADPSSFDRVAEYWLPLFRREGINVPVILVGNKIDLRGGRVTNQGLEDESAPIMREFKEVETVVECSALLPLNVSEVFYFAQKAVLHPTAPLYDSREHTLKPKCLEALKRIFTISDVDKDGLLN 209          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO2_CHICK (Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.365e-42
Identity = 90/209 (43.06%), Postives = 126/209 (60.29%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR---RLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            K  VRI++ GE   GK+SLI+    + FP  VPP      +P D  P++VP  I+D   S +   +L EE+ +A+ V + Y   +  T++++ T W+P +        ++P+I+VG K DL    Q  S  +V++PIM QF EIETC+ECSA     + E+FYYAQKAVLHPT PL+D E + L+P C RAL RIF L D D +  LSD
Sbjct:    2 KRDVRILLLGEAQVGKTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQTEDELQEEIAKANVVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDL----QMGSSMEVILPIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQLRPACSRALTRIFNLSDQDNNQILSD 206          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO2_PIG (Mitochondrial Rho GTPase 2 OS=Sus scrofa GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.086e-41
Identity = 89/209 (42.58%), Postives = 127/209 (60.77%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR---RLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            K  VRI++ GE   GK+SLI++   + FP  VPP      +P D  P++VP  I+D   + +   +L +E+++A  V + Y      T++++ T W+P +    R   +VP+I+VG K DLR         + ++PIM QF EIETC+ECSA     + E+FYYAQKAVLHPT PL+D E++ L+P C +AL RIF L D D D ALSD
Sbjct:    2 KRDVRILLLGEAQVGKTSLILSLVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSEAEQTAEELQDEIQKASVVCVVYDVSEETTVEKIRTKWIPLVNGGTRRGPRVPIILVGNKSDLRPGGSM----EAVLPIMSQFPEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDMDQALSD 206          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO1_MOUSE (Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.086e-41
Identity = 85/209 (40.67%), Postives = 132/209 (63.16%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLP---ELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            K  VRI++ GE   GK+SLI++  ++ FP  VPP      +P D  P+RVP  I+D   + +   +L +E+ +A+ + + YA +   ++D++++ W+P   E    + ++P+I+VG K DL     + S  + ++PIM Q+ EIETC+ECSA     + E+FYYAQKAVLHPTGPL+  E + +KP C++AL RIF + D D DG L+D
Sbjct:   15 KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDL----VEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLND 219          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO1_HUMAN (Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.086e-41
Identity = 85/209 (40.67%), Postives = 132/209 (63.16%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLP---ELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            K  VRI++ GE   GK+SLI++  ++ FP  VPP      +P D  P+RVP  I+D   + +   +L +E+ +A+ + + YA +   ++D++++ W+P   E    + ++P+I+VG K DL     + S  + ++PIM Q+ EIETC+ECSA     + E+FYYAQKAVLHPTGPL+  E + +KP C++AL RIF + D D DG L+D
Sbjct:    2 KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDL----VEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLND 206          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO1_BOVIN (Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.086e-41
Identity = 85/209 (40.67%), Postives = 132/209 (63.16%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLP---ELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            K  VRI++ GE   GK+SLI++  ++ FP  VPP      +P D  P+RVP  I+D   + +   +L +E+ +A+ + + YA +   ++D++++ W+P   E    + ++P+I+VG K DL     + S  + ++PIM Q+ EIETC+ECSA     + E+FYYAQKAVLHPTGPL+  E + +KP C++AL RIF + D D DG L+D
Sbjct:   15 KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDL----VEYSSMETILPIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLND 219          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO2_DANRE (Mitochondrial Rho GTPase 2 OS=Danio rerio GN=rhot2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.419e-41
Identity = 90/209 (43.06%), Postives = 126/209 (60.29%), Query Frame = 3
Query:  156 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR---RLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            K  VRI++ GE   GK+SLI++   + FP  VP       +P D  P++VP  I+D   + +    L EE+ +A+ V + Y   + ET+D++ T W+P +        K+P+I+VG K DLR  +      + ++PIM QF EIETC+ECSA     + E+FYYAQKAVLHPT PL+D E + LK +CVRAL RIF + D D D  LSD
Sbjct:    2 KRDVRILLLGEPKVGKTSLIMSLVGEEFPEQVPLRAEEITIPADVTPEKVPTHIVDYSENEQTDEVLREEIVKANVVCVVYDVTQEETIDKIRTKWIPLVNGGAEKGSKIPIILVGNKSDLRSGSSM----ETILPIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEDKQLKAQCVRALSRIFSISDQDNDHILSD 206          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: GEM1_NEUCR (Mitochondrial Rho GTPase 1 OS=Neurospora crassa GN=gem-1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.159e-41
Identity = 94/208 (45.19%), Postives = 129/208 (62.02%), Query Frame = 3
Query:  159 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDF-YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL-RDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            T VRI VCG++GTGKSSLI +     F AN +  VLP   +P     P+ V  TI+DT +  +DR  L +E+R+++ ++L Y+     + + ++ FW+P  R L V VPV++   K DL  D N     E+ M+P+M +FREI++CI  SA +Q  V EVFY  QKAV HP  PLFD +   LKP CV AL+RIF L D D+DG L+D
Sbjct:    3 TAVRICVCGDEGTGKSSLIASLVKGVFVANKIQAVLPQVTIPPTTGTPENVTTTIVDTSARPQDRTTLRKEIRKSNVILLVYSDHY--SYERVALFWMPYFRSLGVNVPVVLCANKSDLVSDGNAAQVAEEEMLPVMAEFREIDSCIRTSAKEQKNVIEVFYLCQKAVTHPIAPLFDYKEGQLKPACVDALRRIFFLSDKDQDGYLND 208          
BLAST of CF838532 vs. ExPASy Swiss-Prot
Match: MIRO2_HUMAN (Mitochondrial Rho GTPase 2 OS=Homo sapiens GN=RHOT2 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.126e-41
Identity = 88/206 (42.72%), Postives = 126/206 (61.17%), Query Frame = 3
Query:  165 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV---KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSD 773
            VRI++ GE   GK+SLI++   + FP  VPP      +P D  P++VP  I+D   + +   +L EE+ +A+ V + Y      T++++ T W+P +        +VP+I+VG K DLR  +      + ++PIM QF EIETC+ECSA     + E+FYYAQKAVLHPT PL+D E++ L+P C +AL RIF L D D D ALSD
Sbjct:    5 VRILLLGEAQVGKTSLILSLVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSEAEQTDEELREEIHKANVVCVVYDVSEEATIEKIRTKWIPLVNGGTTQGPRVPIILVGNKSDLRSGSSM----EAVLPIMSQFPEIETCVECSAKNLRNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDLDQALSD 206          
The following BLAST results are available for this feature:
BLAST of CF838532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
GEM1_USTMA6.785e-5249.51Mitochondrial Rho GTPase 1 OS=Ustilago maydis GN=G... [more]
GEM1_CRYNE3.261e-4645.32Mitochondrial Rho GTPase 1 OS=Cryptococcus neoform... [more]
MIRO2_CHICK6.365e-4243.06Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHO... [more]
MIRO2_PIG1.086e-4142.58Mitochondrial Rho GTPase 2 OS=Sus scrofa GN=RHOT2 ... [more]
MIRO1_MOUSE1.086e-4140.67Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot... [more]
MIRO1_HUMAN1.086e-4140.67Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT... [more]
MIRO1_BOVIN1.086e-4140.67Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 ... [more]
MIRO2_DANRE2.419e-4143.06Mitochondrial Rho GTPase 2 OS=Danio rerio GN=rhot2... [more]
GEM1_NEUCR3.159e-4145.19Mitochondrial Rho GTPase 1 OS=Neurospora crassa GN... [more]
MIRO2_HUMAN4.126e-4142.72Mitochondrial Rho GTPase 2 OS=Homo sapiens GN=RHOT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838532 ID=CF838532; Name=CF838532; organism=Citrus sinensis; type=EST; length=774bp
CACACTTACACTCCTTTAATCATCTTCGCCGCCGCCACCATCACCACCAC
CGTCCCTTTCTCCTTCTCCTTCCTGAGGTGTCACGTTTTCACCCCCTCTA
CTTCAGTGTTTGTTAAATGGCAAAAGCGTCAGCGGCAAATTCAGGCCCAG
GCGGTAAAACAGGAGTAAGAATTGTTGTATGTGGAGAAAAGGGTACCGGA
AAATCGAGTTTGATTGTGACAGCCGCCGCAGACACTTTTCCCGCCAATGT
CCCACCGGTGTTGCCGCCTACCAGGCTGCCAGAAGACTTCTACCCGGACC
GCGTCCCCATTACCATCATTGATACTCCTTCAAGCGTGGAGGATAGAGGT
AAACTAGGTGAAGAACTCAGGCGGGCTGATGCTGTTGTGCTAACTTATGC
GTGTGATCGACCTGAGACTCTTGATGAATTGAGTACTTTCTGGCTTCCAG
AACTTCGTCGATTAGAGGTGAAAGTGCCAGTTATAGTGGTGGGTTGTAAG
CTTGATTTAAGAGATGAGAACCAGCAGGTGAGCCTGGAACAGGTGATGAT
GCCAATAATGCAACAGTTTCGAGAGATTGAAACTTGCATAGAGTGTTCAG
CATTGAAACAAATTCAGGTCCCCGAGGTTTTCTACTATGCACAGAAGGCA
GTGCTTCATCCAACAGGCCCTTTATTTGACCAGGAATCACAAGCTTTGAA
GCCTCGGTGTGTGAGGGCCTTGAAGCGTATCTTCATTCTTTGTGATCATG
ACAGGGATGGCGCCCTTAGTGATG
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