CF838535

Overview
NameCF838535
Unique NameCF838535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:22..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 5.728e-103
Identity = 184/251 (73.31%), Postives = 206/251 (82.07%), Query Frame = 3
Query:   93 DDVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAA 845
            D  D +IRQV  G +            +L +E HFSLFK+KF K YAS EEHD RF++FKANLRRA R QKLDPSATHGVTQFSDLT +EFR+ +LG+R   +LPKDA++APILPT +LP DFDWR+ GAV PVK+QGSCGSCWSFS TGALEGANFLATGKLVSLSEQQLVDCDHECDPEE  SCDSGCNGGLMNSAFEYTLK GGLM+EEDYPYTG D G  CK DKSKI ASV+NFSV+S+DE+QIAA
Sbjct:   27 DGDDLVIRQVVGGAEP----------QVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLKTGGLMKEEDYPYTGKD-GKTCKLDKSKIVASVSNFSVISIDEEQIAA 266          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 369.777 bits (948), Expect = 1.080e-101
Identity = 183/250 (73.20%), Postives = 207/250 (82.80%), Query Frame = 3
Query:   96 DVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAA 845
            D D LIRQV D           T   +L +E HF+LFKKKF K Y S EEH  RF++FKANL RA R QK+DPSA HGVTQFSDLT +EFRR +LG++   +LPKDA+QAPILPT +LP +FDWR++GAV PVK+QGSCGSCWSFSTTGALEGA+FLATGKLVSLSEQQLVDCDHECDPEE GSCDSGCNGGLMNSAFEYTLK GGLMRE+DYPYTGTD G +CK D+SKI ASV+NFSVVS++EDQIAA
Sbjct:   25 DEDVLIRQVVD----------ETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTLKTGGLMREKDYPYTGTD-GGSCKLDRSKIVASVSNFSVVSINEDQIAA 263          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.511e-95
Identity = 168/248 (67.74%), Postives = 204/248 (82.26%), Query Frame = 3
Query:  102 DQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAA 845
            D +IRQV D  ++           LL AEHHF+ FK KF+K+YA++EEHD RF +FK+NL +A   Q  DP+A HG+T+FSDLT +EFRR +LGL+++LRLP  A +APILPT +LP DFDWREKGAV PVKDQGSCGSCW+FSTTGALEGA++LATGKLVSLSEQQLVDCDH CDPE+ GSCDSGCNGGLMN+AFEY L++GG+++E+DY YTG D   +CKFDKSK+ ASV+NFSVV+LDEDQIAA
Sbjct:   27 DFIIRQVVDNEED----------HLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDYAYTGRD--GSCKFDKSKVVASVSNFSVVTLDEDQIAA 262          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.760e-89
Identity = 169/258 (65.50%), Postives = 193/258 (74.81%), Query Frame = 3
Query:   90 IDDVDQLIRQVTDGGDEILSHHESTNNDL-LGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLR-----LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAA 845
            +D  D LIRQV  GGD+         NDL L AE HF  F ++F K+Y   +EH  R ++FK NLRRA R Q LDPSA HGVT+FSDLTPAEFRRTYLGLR+  R     L + A +AP+LPT+ LP DFDWR+ GAVGPVK+QGSCGSCWSFS +GALEGA++LATGKL  LSEQQ VDCDHECD  EP SCDSGCNGGLM +AF Y  KAGGL  E+DYPYTG+D    CKFDKSKI ASV NFSVVS+DE QI+A
Sbjct:   21 VDAEDPLIRQVVPGGDD---------NDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYPYTGSD--GKCKFDKSKIVASVQNFSVVSVDEAQISA 267          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.822e-47
Identity = 105/232 (45.26%), Postives = 139/232 (59.91%), Query Frame = 3
Query:  177 LGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRA------ARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPT---NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC-DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIA 842
            L  +  F  F+ KFNK Y S EE+  RF IFK+NL +       A   K D     GV +F+DL+  EF+  YL  +  +    D   A  L     N +P  FDWR +GAV PVK+QG CGSCWSFSTTG +EG +F++  KLVSLSEQ LVDCDHEC + E   +CD GCNGGL  +A+ Y +K GG+  E  YPYT  + G  C F+ + I A ++NF+++  +E  +A
Sbjct:   23 LEEQSQFLEFQDKFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTK--FGVNKFADLSSDEFKNYYLNNKEAI-FTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYT-AETGTQCNFNSANIGAKISNFTMIPKNETVMA 249          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 96/209 (45.93%), Postives = 124/209 (59.33%), Query Frame = 3
Query:  195 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL---PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 809
            F+ +  KFN+ Y+S E    R++IFK+N+        K D     G+  F+D+T  E+R+TYLG R         D   +L   DL   P   DWR K AV P+KDQG CGSCWSFSTTG+ EGA+ L T KLVSLSEQ LVDC     PEE    + GC+GGLMN+AF+Y +K  G+  E  YPYT  + G  C F+KS I A++  +
Sbjct:   36 FTEWTLKFNRQYSSSE-FSNRYSIFKSNMDYVDNWNSKGDSQTVLGLNNFADITNEEYRKTYLGTRVNAHSYNGYDGREVLNVEDLQTNPKSIDWRTKNAVTPIKDQGQCGSCWSFSTTGSTEGAHALKTKKLVSLSEQNLVDCS---GPEE----NFGCDGGLMNNAFDYIIKNKGIDTESSYPYT-AETGSTCLFNKSDIGATIKGY 235          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.799e-41
Identity = 108/252 (42.86%), Postives = 133/252 (52.78%), Query Frame = 3
Query:   96 DVDQLIRQVTDGGDEILSHHESTNNDLLGAEHH---FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLD-EDQI 839
            D    IR V+DG  E+    E + + +LG   H   F+ F  ++ K Y + EE   RF+IFK NL       K   S   GV QF+DLT  EF+RT LG  +             +    LP   DWRE G V PVKDQG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + GCNGGL + AFEY    GGL  E+ YPYTG D    CKF    +   V N   ++L  ED++
Sbjct:   27 DESNPIRMVSDGLREV----EESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHK--VTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGAFN-------NYGCNGGLPSQAFEYIKSNGGLDTEKAYPYTGKD--ETCKFSAENVGVQVLNSVNITLGAEDEL 263          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 91/205 (44.39%), Postives = 128/205 (62.44%), Query Frame = 3
Query:  243 EHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQAPILPTN--DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDED 833
            + D+RF IFK NLR      + + +AT+  G+T+F+DLT  E+R+ YLG R    R++   K+ +Q      N  ++P   DWR+KGAV P+KDQG+CGSCW+FSTT A+EG N + TG+L+SLSEQ+LVDCD         S + GCNGGLM+ AF++ +K GGL  E+DYPY G   G    F K+    S+  +  V   ++
Sbjct:   69 DQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCDK--------SYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYRGFG-GKCNSFLKNSRVVSIDGYEDVPTKDE 264          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.176e-39
Identity = 96/218 (44.04%), Postives = 128/218 (58.72%), Query Frame = 3
Query:  204 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQK-LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAA 845
            FK K+ K Y   E+ + RF IFK+N+ +A   Q  +  SA +GVT +SDLT  EF RT+L       +P      P       N++P +FDWREKGAV  VK+QG CGSCW+FSTTG +E   F  TGKL+SLSEQQLVDCD           D GCNGGL ++A+E  +K GGLM E++YPY    +   C      +A  + +   ++ DE ++AA
Sbjct:   23 FKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHL--TASWVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD---------GLDDGCNGGLPSNAYESIIKMGGLMLEDNYPYDA--KNEKCHLKTDGVAVYINSSVNLTQDETELAA 226          
BLAST of CF838535 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.421e-39
Identity = 86/184 (46.74%), Postives = 110/184 (59.78%), Query Frame = 3
Query:  195 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 740
            F  +  + +KAY S EE   RF +F+ NL    +R     S   G+ +F+DLT  EF+  YLGL +     K    A        DLP   DWR+KGAV PVKDQG CGSCW+FST  A+EG N + TG L SLSEQ+L+DCD         + +SGCNGGLM+ AF+Y +  GGL +E+DYPY
Sbjct:   51 FESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCD--------TTFNSGCNGGLMDYAFQYIISTGGLHKEDDYPY 226          
The following BLAST results are available for this feature:
BLAST of CF838535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RD19A_ARATH5.728e-10373.31Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH1.080e-10173.20Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP_PEA1.511e-9567.74Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CYSP1_MAIZE2.760e-8965.50Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI5.822e-4745.26Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CYSP2_DICDI9.619e-4245.93Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
ALEU_ARATH2.799e-4142.86Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
GCP1_ARATH1.389e-4044.39Germination-specific cysteine protease 1 OS=Arabid... [more]
CATL_SCHMA1.176e-3944.04Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
XCP1_ARATH3.421e-3946.74Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838535 ID=CF838535; Name=CF838535; organism=Citrus sinensis; type=EST; length=846bp
AGGGCATTGTCTAAAACATGGGATCTAAAACAGTAGTTTTCTTTCTGGTC
TCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGGACGTTGATCGACGATGT
TGATCAGCTGATCAGGCAAGTAACGGACGGCGGTGACGAGATCCTAAGCC
ACCACGAGAGCACCAACAACGACCTCTTGGGCGCAGAGCACCACTTCTCC
CTATTCAAGAAGAAGTTCAATAAAGCGTACGCTTCGCAGGAGGAGCACGA
CCGTAGGTTCACTATTTTCAAGGCCAACTTGCGACGCGCCGCGCGTCGCC
AGAAGCTCGACCCGAGCGCCACCCACGGCGTCACTCAGTTCTCCGACTTG
ACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGGAAGCTGAG
GCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAATGATTTGC
CGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTTAAAGAT
CAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGCCTTGGA
AGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTGAGCAAC
AGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGTTCTTGT
GATTCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTACACACT
CAAGGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCGGCACTG
ATCGTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCCTCAGTG
GCCAACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGCCA
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