CF838553

Overview
NameCF838553
Unique NameCF838553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9755 contig Csv1_Contig9755:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 8.701e-119
Identity = 216/246 (87.80%), Postives = 219/246 (89.02%), Query Frame = 1
Query:   49 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQ 786
            MERLQR+F      LGH  PDSPTLD+SEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLTL RFD HSKTNEQTVQ
Sbjct:    1 MERLQRIFGAGGG-LGHASPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQ 245          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 369.007 bits (946), Expect = 1.649e-101
Identity = 186/246 (75.61%), Postives = 200/246 (81.30%), Query Frame = 1
Query:   49 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQ 786
            M+RL R+          PP D+P +D++EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD+YTVRV+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +GLTL  +  H K NE  V+
Sbjct:    1 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVK 246          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.649e-101
Identity = 186/246 (75.61%), Postives = 200/246 (81.30%), Query Frame = 1
Query:   49 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQ 786
            M+RL R+          PP D+P +D++EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD+YTVRV+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +GLTL  +  H K NE  V+
Sbjct:    1 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVK 246          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.673e-101
Identity = 180/228 (78.95%), Postives = 196/228 (85.96%), Query Frame = 1
Query:  100 PPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTV 783
            PP D+P +D++EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD+YTV+V+DVFAMPQ+GTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLINP  ++LGQEPRQTTSNLGHL KPS+QALIHGLNRHYYSI+INYR                W DGLTL  ++ H   NE TV
Sbjct:   16 PPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTV 243          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 346.28 bits (887), Expect = 1.144e-94
Identity = 175/245 (71.43%), Postives = 192/245 (78.37%), Query Frame = 1
Query:   49 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTV 783
            ME LQR+        G    D P +D+SE VYISSLALLKML+HGR G PMEVMGLMLGEFVD++TVRVVDVFAMPQSGTGVSVEAVD VFQ NM+DMLKQTGRPEMVVGWYHSHPGFGCWLS VDINTQQSFE L  RAVAVVVDPIQSVKGKVVIDAFRLINP T+M+GQEPRQTTSNLGH+NKPSIQALIHGL RHYYS+ INY+                W  GL L  F+  ++ N  ++
Sbjct:    1 MESLQRLLQGARMGTGMMG-DQPLVDNSECVYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASI 244          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.952e-94
Identity = 180/245 (73.47%), Postives = 191/245 (77.96%), Query Frame = 1
Query:   49 MERLQRM--FXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQ 777
            MER  R+          G  P DS  +D+SE VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD+YTV V+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL+ RAVAVVVDPIQSVKGKVVIDAFR INPQ+M L QEPRQTTSNLGHL KPSIQALIHGLNRHYYSI I YR                W D +++  +   SK  EQ
Sbjct:    1 MERFLRLGGLGGNLGTFGANPQDSNQVDTSETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMDAVSVENY---SKCGEQ 242          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.355e-87
Identity = 164/242 (67.77%), Postives = 185/242 (76.45%), Query Frame = 1
Query:   49 MERLQR-MFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTN 771
            M+RLQR M       +G    + P  D+ E VYISSLALLKMLKH RAGVPMEVMGLMLG+FVDEYTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD++TQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+P T++  QEPRQTTSN+G LNKP+IQ+LIHGLNRHYYS+ I+Y                 W  GL +H +    + N
Sbjct:    1 MDRLQRLMMSQRSNMIGAAATEMPLDDTKETVYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQSGLKMHDYKEKERIN 242          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.831e-84
Identity = 153/224 (68.30%), Postives = 177/224 (79.02%), Query Frame = 1
Query:  112 SPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTV 783
            +P  D++E ++ISSLALLKML+H RAGVP+EVMGLMLGE +DEYT+RV+DVFAMPQSGT VSVEA+D VFQT MLDMLKQTGR E+V+GWYHSHPGFGCWLS VD+NTQQSFE L  RAVAVVVDP+QSV+GKVVIDAFR I         EPRQ TSNLGHL  PSIQALIHGLNR+YYSIAINYR                WT+GL + +FD H ++NE+ +
Sbjct:   22 TPLPDTAETIHISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDMLKQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSVRGKVVIDAFRTIKTSPT---AEPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGLIVDKFDTHEQSNEKQI 242          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.080e-84
Identity = 160/234 (68.38%), Postives = 176/234 (75.21%), Query Frame = 1
Query:   49 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRF 750
            MERLQR+             D    D+ E VYISS+ALLKMLKHGRAGVPMEVMGLMLGEFVDEYTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD+NTQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+   ++  QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y                 W  GL +  +
Sbjct:    1 MERLQRLMMNTKVGAADANKD----DTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQARMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKMQDY 230          
BLAST of CF838553 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.959e-84
Identity = 160/241 (66.39%), Postives = 180/241 (74.69%), Query Frame = 1
Query:   49 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTN 771
            MERLQR+             D    D+ E VYISS+ALLKMLKHGRAGVPMEVMGLMLGEFVD+YTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD+NTQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+   ++   EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y                 W  GL ++ ++   ++N
Sbjct:    1 MERLQRLMMNSKVGSADTGRD----DTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESN 237          
The following BLAST results are available for this feature:
BLAST of CF838553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PSDE_ARATH8.701e-11987.8026S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE1.649e-10175.6126S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN1.649e-10175.6126S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME3.673e-10178.9526S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_SCHPO1.144e-9471.4326S proteasome regulatory subunit rpn11 OS=Schizos... [more]
PSDE_CAEEL1.952e-9473.4726S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_ASHGO1.355e-8767.7726S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
PSDE_DICDI1.831e-8468.3026S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_CANGA4.080e-8468.3826S proteasome regulatory subunit RPN11 OS=Candida... [more]
RPN11_YEAST6.959e-8466.3926S proteasome regulatory subunit RPN11 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838553 ID=CF838553; Name=CF838553; organism=Citrus sinensis; type=EST; length=786bp
CGACGAGAAGGTTTTGAGGAATTGAAAAAAAGCTAGAACATGTCAGGTAT
GGAGCGATTGCAAAGAATGTTCGCTGGTGCCGGTGGCGCCTTGGGTCACC
CGCCACCAGACTCCCCGACTCTTGATTCATCGGAGCAGGTCTACATCTCC
TCACTCGCGCTCCTCAAGATGCTCAAACACGGTAGAGCTGGTGTGCCCAT
GGAGGTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGAGTACACAGTTC
GGGTTGTTGATGTGTTTGCTATGCCACAAAGTGGAACTGGTGTTAGTGTT
GAAGCTGTTGATCATGTGTTCCAGACTAACATGCTTGACATGCTCAAGCA
GACTGGAAGACCAGAAATGGTTGTTGGATGGTATCACTCACATCCTGGAT
TTGGTTGCTGGCTCTCTGGTGTTGACATAAACACACAGCAGAGTTTTGAA
GCTTTGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCAATCCAGAGCGT
GAAAGGGAAGGTAGTGATTGATGCCTTCCGCTTGATTAATCCCCAAACCA
TGATGCTTGGCCAAGAACCACGGCAGACAACTTCCAATCTTGGTCATCTT
AATAAGCCATCCATCCAAGCATTGATCCATGGCTTGAATAGACATTATTA
TTCTATTGCCATCAATTACAGGAAGAATGAACTTGAAGAAAAGATGCTAC
TAAATCTGCACAAGAAGAAATGGACTGATGGATTAACACTTCATCGCTTT
GATTGTCATTCCAAAACCAATGAACAGACTGTCCAG
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