CF838556

Overview
NameCF838556
Unique NameCF838556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:818..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.013e-96
Identity = 178/197 (90.36%), Postives = 190/197 (96.45%), Query Frame = 2
Query:  101 DPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIG   +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AFRNIK+IAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.946e-96
Identity = 178/207 (85.99%), Postives = 191/207 (92.27%), Query Frame = 2
Query:   71 MATAVMAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            MATA    ++       +VKLFNRWT++DV V DISL DYIG QAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.494e-95
Identity = 176/207 (85.02%), Postives = 190/207 (91.79%), Query Frame = 2
Query:   71 MATAVMAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIG Q +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 313.538 bits (802), Expect = 8.891e-85
Identity = 157/205 (76.59%), Postives = 181/205 (88.29%), Query Frame = 2
Query:   77 TAVMAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI  +  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 313.538 bits (802), Expect = 8.891e-85
Identity = 157/205 (76.59%), Postives = 181/205 (88.29%), Query Frame = 2
Query:   77 TAVMAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI  +  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 310.842 bits (795), Expect = 5.763e-84
Identity = 152/190 (80.00%), Postives = 174/190 (91.58%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            D+KLF +W+ +DVQ+NDISL DYI  +  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIK IAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 6.372e-83
Identity = 149/189 (78.84%), Postives = 172/189 (91.01%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            VKLFNRW++EDV++ DISL+DYI     +   Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI LLTTGARE++FRN+K+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYI---QIRSPVYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 306.99 bits (785), Expect = 8.322e-83
Identity = 154/205 (75.12%), Postives = 178/205 (86.83%), Query Frame = 2
Query:   77 TAVMAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI  +  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINA KGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.964e-81
Identity = 150/190 (78.95%), Postives = 170/190 (89.47%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            ++KLF RW+ +DV VNDISL DYI  +  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   40 EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of CF838556 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 8.612e-80
Identity = 143/190 (75.26%), Postives = 171/190 (90.00%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGEQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 691
            D+KLF +W  E + ++DISL+DYI  +   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++FRNIK+IAECLADELINAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
The following BLAST results are available for this feature:
BLAST of CF838556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS5_CICAR1.013e-9690.3640S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH2.946e-9685.9940S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH2.494e-9585.0240S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN8.891e-8576.5940S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN8.891e-8576.5940S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE5.763e-8480.0040S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_NEUCR6.372e-8378.8440S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_RAT8.322e-8375.1240S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5A_DROME5.964e-8178.9540S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA8.612e-8075.2640S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838556 ID=CF838556; Name=CF838556; organism=Citrus sinensis; type=EST; length=823bp
CGAGCGGCAGCCCATTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAATGGCACAATCTCAA
GACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTT
CGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGAGC
AAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCA
GTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAA
CTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCTGTCA
GGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCAGAAC
CCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGA
TGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATA
TTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGGT
GCTCGTGAATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGGC
CGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATCA
AGAAGAAGGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACGT
GATAGTGGAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAAA
CTTTTGGACGATGTTTTGTTGCTATTTTATGAATGTTGTTTCAAGTTTTG
AGTACATGATATTGAGGATGCAT
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