CF838565

Overview
NameCF838565
Unique NameCF838565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838565_ssr69 microsatellite CF838565_ssr69:69..82. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838565_ssr111 microsatellite CF838565_ssr111:111..124. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1286 contig Csv1_Contig1286:1..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1_TOBAC (Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.491e-71
Identity = 142/203 (69.95%), Postives = 155/203 (76.35%), Query Frame = 2
Query:  221 MTLISRASPSCRVLTDVTRCTIRRSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            M L+S+A  S  + ++  +C    SG   +  N E  +MK+ C   + SSR S+K  Q ++LD             VAASPPTEDAVV  EPLTKEDLV YLASGCK KEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLN IAERFDWEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:    1 MALMSQAGSSHCIYSEKMKCI---SGHSSITSNMEMLKMKDICFG-NISSRNSSKPMQGIYLDRVGVERRRGRLAIVAASPPTEDAVVAAEPLTKEDLVAYLASGCKSKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNGIAERFDWEKVMEGDNIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 199          
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1_SOLLC (Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.399e-71
Identity = 139/203 (68.47%), Postives = 155/203 (76.35%), Query Frame = 2
Query:  221 MTLISRASPSCRVLTDVTRCTIRRSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            M L+S+A  S  + ++  RC    SG   +  N +  RM+E C     SSR +++  Q  +L++            VAASPPTEDAVV  EPLTKEDLVGYLASGCK KEKWRIGTEHEKFGFEFGTLRPMKY+QIA+LLN IAERFDWEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:    1 MALMSQAGSSHCIYSEKVRCI---SGHRSIINNMDMFRMREICFGVDISSRNASRRVQGNYLNHIGVGSRRGDLTIVAASPPTEDAVVAAEPLTKEDLVGYLASGCKSKEKWRIGTEHEKFGFEFGTLRPMKYDQIADLLNGIAERFDWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 200          
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1_ARATH (Glutamate--cysteine ligase, chloroplastic OS=Arabidopsis thaliana GN=GSH1 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.144e-63
Identity = 134/204 (65.69%), Postives = 153/204 (75.00%), Query Frame = 2
Query:  221 MTLISRASPSCRVL-TDVTRCTIRRSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            M L+S+A  S  V+ + V      ++ V G  +N +  RMKE   +F SS  YS  +S    L ++           VAASPPTE+AVV TEPLT+EDL+ YLASGCK K+K+RIGTEHEKFGFE  TLRPMKY+QIAELLN IAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:    1 MALLSQAGGSYTVVPSGVCSKAGTKAVVSGGVRNLDVLRMKE---AFGSS--YSRSLSTKSMLLHSVKRSKRGHQLIVAASPPTEEAVVATEPLTREDLIAYLASGCKTKDKYRIGTEHEKFGFEVNTLRPMKYDQIAELLNGIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 199          
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1_BRAJU (Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea GN=GSH1 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.549e-63
Identity = 127/180 (70.56%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  290 RSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            R+G   ++      RMKET VS           S+ L   +            VAASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE  TLRPMKY+QIAELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:   21 RTGTKTVSGCVNVLRMKETYVS---------SYSRTLSTKSMLKRSKRGHQLIVAASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIAELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 191          
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1_MEDTR (Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula GN=GSH1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 7.416e-63
Identity = 123/167 (73.65%), Postives = 137/167 (82.04%), Query Frame = 2
Query:  335 MKETCVS--FSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            +++T +S  FS SS+ S    ++L    +           VAASPPTEDAVV TEPLTK+DL+ YLASGCK K+KWRIGTEHEKFGFE G+LRPMKYEQI+ELLN IAERFDW+KVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:   26 IRKTSISNTFSFSSKNSLSFKRILTSGGSRRFI-------VAASPPTEDAVVATEPLTKQDLIDYLASGCKTKDKWRIGTEHEKFGFELGSLRPMKYEQISELLNGIAERFDWDKVMEGDNIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 185          
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1A_ORYSJ (Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.382e-58
Identity = 105/127 (82.68%), Postives = 117/127 (92.13%), Query Frame = 2
Query:  449 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            VAASPPTE+AV +TEPLTKEDLV YL SGCKPKE WRIGTEHEKFGFE  TLRP+KY+QI ++LN +AERFDW+K++E + +IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:   43 VAASPPTEEAVQMTEPLTKEDLVAYLVSGCKPKENWRIGTEHEKFGFEVDTLRPIKYDQIRDILNGLAERFDWDKIVEENNVIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 169          
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1A_ORYSI (Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-1 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.382e-58
Identity = 105/127 (82.68%), Postives = 117/127 (92.13%), Query Frame = 2
Query:  449 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            VAASPPTE+AV +TEPLTKEDLV YL SGCKPKE WRIGTEHEKFGFE  TLRP+KY+QI ++LN +AERFDW+K++E + +IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:   43 VAASPPTEEAVQMTEPLTKEDLVAYLVSGCKPKENWRIGTEHEKFGFEVDTLRPIKYDQIRDILNGLAERFDWDKIVEENNVIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 169          
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1B_ORYSJ (Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-2 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.090e-57
Identity = 104/127 (81.89%), Postives = 117/127 (92.13%), Query Frame = 2
Query:  449 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            VAASPPTE+AV +TEPLTKEDL+ YL SGCKPKE WRIGTEHEKFGFE  TLRP+KY+QI ++LN +AERFDW+K++E + +IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:   47 VAASPPTEEAVQMTEPLTKEDLMAYLVSGCKPKENWRIGTEHEKFGFEVDTLRPIKYDQIRDILNGLAERFDWDKIVEENNVIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 173          
BLAST of CF838565 vs. ExPASy Swiss-Prot
Match: GSH1B_ORYSI (Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-2 PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.090e-57
Identity = 104/127 (81.89%), Postives = 117/127 (92.13%), Query Frame = 2
Query:  449 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 829
            VAASPPTE+AV +TEPLTKEDL+ YL SGCKPKE WRIGTEHEKFGFE  TLRP+KY+QI ++LN +AERFDW+K++E + +IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV
Sbjct:   47 VAASPPTEEAVQMTEPLTKEDLMAYLVSGCKPKENWRIGTEHEKFGFEVDTLRPIKYDQIRDILNGLAERFDWDKIVEENNVIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV 173          
The following BLAST results are available for this feature:
BLAST of CF838565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GSH1_TOBAC1.491e-7169.95Glutamate--cysteine ligase, chloroplastic OS=Nicot... [more]
GSH1_SOLLC7.399e-7168.47Glutamate--cysteine ligase, chloroplastic OS=Solan... [more]
GSH1_ARATH1.144e-6365.69Glutamate--cysteine ligase, chloroplastic OS=Arabi... [more]
GSH1_BRAJU2.549e-6370.56Glutamate--cysteine ligase, chloroplastic OS=Brass... [more]
GSH1_MEDTR7.416e-6373.65Glutamate--cysteine ligase, chloroplastic OS=Medic... [more]
GSH1A_ORYSJ9.382e-5882.68Glutamate--cysteine ligase A, chloroplastic OS=Ory... [more]
GSH1A_ORYSI9.382e-5882.68Glutamate--cysteine ligase A, chloroplastic OS=Ory... [more]
GSH1B_ORYSJ2.090e-5781.89Glutamate--cysteine ligase B, chloroplastic OS=Ory... [more]
GSH1B_ORYSI2.090e-5781.89Glutamate--cysteine ligase B, chloroplastic OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06P07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838565 ID=CF838565; Name=CF838565; organism=Citrus sinensis; type=EST; length=830bp
ACCGGTTCAGCAGGTTCTGTATATAATAACACTAACGTCTAACAATACTC
ACAAGAAAACCAAAGTCCCTCTCTCTCTCTCTGCATTCTGCAAGTGAGTC
TTCGCTGTCCTATATATATATATAACTCAACGAGTGTTTTATCTTCTACG
AAATTCGAAACCCTAGTTTTTAAGATTCCAATTGTGGTAATTCGTTCAGC
GTTAACCAAGCGGGAGCAGTATGACTCTCATTTCGCGGGCCAGTCCATCA
TGTCGTGTATTGACTGATGTAACACGATGTACAATCAGACGAAGTGGGGT
TTGTGGCTTGGCAAAAAATGCTGAGGCATCTAGGATGAAGGAAACTTGTG
TTAGTTTCTCTTCCTCATCACGCTATTCTGCCAAGATATCACAAGTTTTA
CATCTAGACAATGCAGGGATAGGAATTCGAAGAGGACGTCGATCTATTGT
TGCAGCTAGTCCTCCCACGGAGGATGCTGTTGTTGTAACGGAGCCATTGA
CCAAAGAGGATCTAGTTGGATACCTTGCCTCTGGGTGCAAGCCTAAGGAA
AAGTGGAGAATTGGTACAGAACATGAGAAGTTTGGTTTTGAGTTTGGAAC
TTTACGTCCTATGAAATACGAACAAATAGCCGAGTTGCTTAACAGCATTG
CTGAGAGGTTCGATTGGGAGAAAGTAATGGAAGGAGATTACATCATAGGA
CTGAAACAAGGGAAACAAAGCATATCACTTGAACCTGGCGGTCAGTTTGA
GCTTAGTGGTGCACCTCTTGAAACTCTGCATCAAACTTGTGCTGAGGTTA
ATTCACACCTATATCAGGTGAAAGCTGTTG
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