CF838598

Overview
NameCF838598
Unique NameCF838598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: P2C55_ARATH (Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 9.588e-55
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = -1
Query:  477 QQHDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYI 824
            QQHDFNFTYQLE G N DLPSSGQVFT+ VAPGDVIIAGTDGLFDNLYNNEITA+VVHA+RA + PQVTAQKIAALARQRAQDK+RQTPFSTAAQDAGFRYYGGKLDDITVVVSY+
Sbjct:  343 QQHDFNFTYQLESGRNGDLPSSGQVFTVAVAPGDVIIAGTDGLFDNLYNNEITAIVVHAVRANIDPQVTAQKIAALARQRAQDKNRQTPFSTAAQDAGFRYYGGKLDDITVVVSYV 458          
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: P2C80_ARATH (Probable protein phosphatase 2C 80 OS=Arabidopsis thaliana GN=At5g66720 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.367e-45
Identity = 88/118 (74.58%), Postives = 104/118 (88.14%), Query Frame = -1
Query:  471 QQHDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITN 824
            QQH FNFTYQLE G+++D+PSSGQVFTI V  GDVI+AGTDG++DNLYN EIT VVV ++RAGL P+ TAQKIA LARQRA DK RQ+PF+TAAQ+AG+RYYGGKLDDIT VVSY+T+
Sbjct:  296 QQHGFNFTYQLESGNSADVPSSGQVFTIDVQSGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGLDPKGTAQKIAELARQRAVDKKRQSPFATAAQEAGYRYYGGKLDDITAVVSYVTS 413          
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: P2C62_ARATH (Probable protein phosphatase 2C 62 OS=Arabidopsis thaliana GN=At4g33500 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.373e-18
Identity = 43/112 (38.39%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  477 NFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFR-YYGGKLDDITVVVSYI 809
            +F + L      D+    +V+ + +  GDV+IA TDGLFDNLY  EI ++V  +++  L PQ  A+ +AA A++  + K  +TPF+ AA++ G+  + GGKLD +TV++S++
Sbjct:  608 HFCFPLHITQGCDVLKLAEVYHVNLEEGDVVIAATDGLFDNLYEKEIVSIVCGSLKQSLEPQKIAELVAAKAQEVGRSKTERTPFADAAKEEGYNGHKGGKLDAVTVIISFV 719          
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: BIP2C_ORYSJ (Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. japonica GN=BIPP2C1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  465 HDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGF-RYYGGKLDDITVVVSYITNCE 818
            + FNF  Q+E G   D     Q +TI +  GD I+  TDGLFDN+Y  EI AV+  ++ AGL P   A+ + A A++  +    ++PFS AA   G+  Y GGKLDD+TVVVS +   E
Sbjct:  452 YGFNFPLQIEKGD--DPFKLVQKYTIDLQEGDAIVTATDGLFDNVYEEEIAAVISKSLEAGLKPSEIAEFLVARAKEVGRSATCRSPFSDAALAVGYLGYSGGKLDDVTVVVSVVRKSE 568          
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: BIP2C_ORYSI (Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. indica GN=BIPP2C1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  465 HDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGF-RYYGGKLDDITVVVSYITNCE 818
            + FNF  Q+E G   D     Q +TI +  GD I+  TDGLFDN+Y  EI AV+  ++ AGL P   A+ + A A++  +    ++PFS AA   G+  Y GGKLDD+TVVVS +   E
Sbjct:  452 YGFNFPLQIEKGD--DPFKLVQKYTIDLQEGDAIVTATDGLFDNVYEEEIAAVISKSLEAGLKPSEIAEFLVARAKEVGRSATCRSPFSDAALAVGYLGYSGGKLDDVTVVVSVVRKSE 568          
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: P2C71_ORYSJ (Probable protein phosphatase 2C 71 OS=Oryza sativa subsp. japonica GN=Os10g0370000 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.143e-16
Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = -1
Query:  465 HDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGF-RYYGGKLDDITVVVSYITNCE 818
            + FNF  Q+E G N       Q +TI +  GDVI+  +DGLFDN+Y  E+  +V  +++A L P   A+ +AA A++  +     TPFS AA   G+  + GGKLDDI VVVS +   E
Sbjct:  348 YGFNFPLQIEKGDNP--LKLVQNYTIELEDGDVIVTASDGLFDNVYEQEVATMVSKSLQADLKPTEIAEHLAAKAQEVGRSAAGSTPFSDAALAVGYLGFSGGKLDDIAVVVSIVRKSE 464          
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: P2C24_ORYSJ (Putative protein phosphatase 2C 24 OS=Oryza sativa subsp. japonica GN=Os02g0633900 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = -1
Query:  477 QQHDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFS-TAAQDAGFRYYGGKLDDITVVVSYI 824
            Q H FN+ +QL   + + + S+ +   + V  GDV++AGTDGLFDN+ + E+  +V      GL P+ TA  +A  A + +    R TPFS  + +  G  +  GK DDITVVV+YI
Sbjct:  199 QVHSFNYPFQLSVKNGNSVTSAARG-GVEVKEGDVVVAGTDGLFDNVTSEELQRIVAMGRALGLSPKQTADVVAGFAYEASTTMGRDTPFSLESRKKQGTIFRRGKRDDITVVVAYI 314          
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: P2C01_ORYSJ (Probable protein phosphatase 2C 1 OS=Oryza sativa subsp. japonica GN=Os01g0164600 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = -1
Query:  477 QQHDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGF-----------RYYGGKLDDITVVVSYI 824
            Q+H F+  YQL   +         V T+ +  GD+I++G+DG FDN+++ EI +V+  +     G    A+ +A LAR+ + D    +P+S  A+  GF           +  GGK+DDITV+V+ +
Sbjct:  170 QEHYFDCPYQLSSEAIGQTYLDALVCTVNLMEGDMIVSGSDGFFDNIFDQEIVSVISESP----GVDEAAKALAELARKHSVDVTFDSPYSMEARSRGFDVPSWKKFIGGKLIGGKMDDITVIVAQV 292          
BLAST of CF838598 vs. ExPASy Swiss-Prot
Match: P2C23_ORYSJ (Putative protein phosphatase 2C 23 OS=Oryza sativa subsp. japonica GN=Os02g0633700 PE=5 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = -1
Query:  465 QQHDFNFTYQLEYGSNSDLPSSGQVFTIPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFST----AAQDAGFRYYGGKLDDITVVVSYITNCE 824
            QQ  FN  Y L      +  + G V  + V  GDV++AGTDGLFDN+ + E+  VV      G  P+  A  I   A + ++   + +PF+       ++    +YGGK+DDITVVV+ I + +
Sbjct:  195 QQRYFNAPYYLGGRRGDEGMTVGMVGEMKVRRGDVVVAGTDGLFDNMSDAELEKVVQIGTALGFSPKNMADIIGGTAYEMSRCLLKDSPFAVEWRKQHENEEGHFYGGKVDDITVVVACIVSSD 318          
The following BLAST results are available for this feature:
BLAST of CF838598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
P2C55_ARATH9.588e-5589.66Probable protein phosphatase 2C 55 OS=Arabidopsis ... [more]
P2C80_ARATH2.367e-4574.58Probable protein phosphatase 2C 80 OS=Arabidopsis ... [more]
P2C62_ARATH9.373e-1838.39Probable protein phosphatase 2C 62 OS=Arabidopsis ... [more]
BIP2C_ORYSJ2.088e-1742.86Probable protein phosphatase 2C BIPP2C1 OS=Oryza s... [more]
BIP2C_ORYSI2.088e-1742.86Probable protein phosphatase 2C BIPP2C1 OS=Oryza s... [more]
P2C71_ORYSJ5.143e-1641.18Probable protein phosphatase 2C 71 OS=Oryza sativa... [more]
P2C24_ORYSJ1.954e-1539.32Putative protein phosphatase 2C 24 OS=Oryza sativa... [more]
P2C01_ORYSJ7.685e-1232.28Probable protein phosphatase 2C 1 OS=Oryza sativa ... [more]
P2C23_ORYSJ3.814e-1134.68Putative protein phosphatase 2C 23 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06A10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838598 ID=CF838598; Name=CF838598; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTCTTTTTTTGCCCACAAAATACCAATCGATTAAACAGATC
TGCTTCCTAAAAAAATCATCTAGAAGCTGTTAACAGGGTCCTTTCAAGTC
CTTGTAACATGCTTAAGAAGAAGGCTTGTTTTCCTGTATAACAAGAATAG
ATGAATGTTACTAAATCAGTTTGACATTTATAACTCCCTGCTACATACAG
AGGTTATATAGACCGCCTAAAATTCAATCTTCAAACATTGCCGATTTGGT
GGCTTGTTGATCCGCTAAGAAGACAGAACCAAGAACGAAAGTGGACTCCT
ACTATCAATTATAGAGCATTTGTAGCATGCAAAATAGAATGTGCACTAAG
ACAGGCTAGGCAGGAGAGAGATCACAAGGACATAAACTGATCTAAAGTTT
GATTTGCCAAAGCAATAAAACAACGAAATCATATGACAGGTATAAAGAAC
AAGGAACATACATCTTCACAATTAGTAATGTATGAGACAACAACTGTGAT
GTCGTCCAGCTTGCCACCATAGTAGCGGAACCCAGCATCTTGAGCAGCAG
TGGAAAAAGGTGTCTGCCGGTCTTTATCCTGTGCTCGTTGGCGTGCCAAG
GCTGCTATCTTCTGAGCTGTAACCTGAGGCCCTAAGCCAGCTCTCATAGC
ATGGACTACCACTGCAGTAATCTCATTGTTATACAAATTATCAAACAGCC
CATCAGTGCCGGCAATTATAACATCTCCAGGAGCTACAGGAATCGTGAAA
ACCTGACCAGAGCTAGGTAAATCACTATTGCTTCCGTACTCAAGTTGATA
GGTGAAATTGAAATCATGCTGCTG
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