CF838605

Overview
NameCF838605
Unique NameCF838605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1289 contig Csv1_Contig1289:1..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT23_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 5.728e-103
Identity = 180/249 (72.29%), Postives = 209/249 (83.94%), Query Frame = 1
Query:  103 MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLNEHETF--LPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 843
            M++  A   L + N+  LP R   SQ A +  SS+ E ET   LP+MPPF+YSPPPYDGPS  EI+AKR+ FLSP+LFH Y+ PLN+V+ KMQY+FDENGRRYLDAFGGIATV CGHCHP VV+S+V Q+K I HST+LYLNH I+DFAEAL S +PG+LKVVFFTNSGTEANELA+MMARLYTGCNDI+SLRN+YHGNAA TMGATAQSNWKFNVVQ+GVHHA+NPDPYRG+FG+DGE YA DV DLI
Sbjct:    1 MRKLTAVNSLLKRNNYLLP-RHGSSQTAAQRTSSVRETETETKLPKMPPFNYSPPPYDGPSTAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEANELAMMMARLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDPYRGIFGSDGEKYASDVHDLI 248          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT22_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2)

HSP 1 Score: 371.703 bits (953), Expect = 2.843e-102
Identity = 179/247 (72.47%), Postives = 208/247 (84.21%), Query Frame = 1
Query:  103 MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLNEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 843
            MQRFAA+R +    S+ L +RC  S  +Q   +S+ + + F  R+PPF Y+PPPY GPSAD IL+KRK FLSPS+F LY KPLN+VDGKMQYLFDE+GRRYLDAF GIA V CGHCHP VV+ ++NQIKR+QH TVLYLNHAIADF+EALASK+PG+LKVVFFTNSGTEANELA+MMA+LYTGC DI+++RN YHGNAA TMGAT QS WKFNVVQ  VHHALNPDPYRGVFG+DGE YAKD+QDLI
Sbjct:    1 MQRFAAKRSVQNI-SVSLWRRCI-SSTSQAATASVKDSDEFQARLPPFAYTPPPYTGPSADVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDAFAGIAVVNCGHCHPDVVEPVINQIKRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTNSGTEANELALMMAKLYTGCQDIVAVRNGYHGNAAATMGATGQSMWKFNVVQNSVHHALNPDPYRGVFGSDGEKYAKDLQDLI 245          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT21_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.502e-82
Identity = 138/205 (67.32%), Postives = 169/205 (82.44%), Query Frame = 1
Query:  229 PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 843
            P +PPF + P PY GPSADE+L KRK FL PSLFH Y KPLN+V+GKMQYL+DE+GRRYLDAF GI TV CGHCHP ++++I  Q K +QH+T +YL+HAI DFAEALA+KMPGNLKVV+F NSG+EANELA+MMARLYTG  ++ISLRNAYHG ++ T+G TA + WK+ + Q  +HH +NPDPYRGVFG+DG +YAKDV D I
Sbjct:   39 PHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGSLEMISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHVVNPDPYRGVFGSDGSLYAKDVHDHI 243          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT2_PONAB (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 81/192 (42.19%), Postives = 114/192 (59.38%), Query Frame = 1
Query:  229 PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHALNPDPYRGVFG 801
            PRMPP D+ P  Y     + +L   K  LSP +   + KPL +  G M++LFD  G RYLD F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE LA+ +P  LKV+F  NSG+EANELA++MAR ++   DIIS R AYHG +  T+G T    +K  +   TG    + PD +RG +G
Sbjct:   46 PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGNRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNIGTYKMELPGGTGCQPTMCPDVFRGPWG 237          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT2_HUMAN (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 81/192 (42.19%), Postives = 114/192 (59.38%), Query Frame = 1
Query:  229 PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHALNPDPYRGVFG 801
            PRMPP D+ P  Y     + +L   K  LSP +   + KPL +  G M++LFD  G RYLD F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE LA+ +P  LKV+F  NSG+EANELA++MAR ++   DIIS R AYHG +  T+G T    +K  +   TG    + PD +RG +G
Sbjct:   46 PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWG 237          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT2_RAT (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.039e-36
Identity = 79/190 (41.58%), Postives = 112/190 (58.95%), Query Frame = 1
Query:  235 MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHALNPDPYRGVFG 801
            MPP D+SP  Y   + + +L   K  LSP     + KPL +  G M++LFD  G RYLD F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE L++ +P  LKV+F  NSG+EAN+LA++MAR Y+   DIIS R AYHG +  T+G T    +K  V  T      + PD +RG +G
Sbjct:   46 MPPCDFSPEKYQSLAYNHVLEIHKQHLSPVNTAYFQKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVGVGHCHPKVTAVAKKQMDRLWHTSSVFFHSPMHEYAERLSALLPEPLKVIFLVNSGSEANDLAMVMARAYSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMKVPSTIACQSTMCPDVFRGPWG 235          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT2_MOUSE (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 80/190 (42.11%), Postives = 112/190 (58.95%), Query Frame = 1
Query:  235 MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHALNPDPYRGVFG 801
            MPP D+SP  Y   +   +LA  K  LSP     + KPL +  G M++LFD  G RYLD F GI TV  GHCHP V      QI R+ H++ ++ +  + ++AE L++ +P  LKV+F  NSG+EAN+LA++MAR ++   DIIS R AYHG +  T+G T    +K  V    G    + PD +RG +G
Sbjct:   47 MPPCDFSPEKYQSLAYSRVLAIHKQHLSPVDTAYFRKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVSVGHCHPKVSAVAKKQIDRLWHTSSVFFHSPMHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMVMARAHSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMEVPGGIGCQSTMCPDVFRGPWG 236          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AGT2_BOVIN (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 83/223 (37.22%), Postives = 124/223 (55.61%), Query Frame = 1
Query:  136 ETNSLRLPQRCFFSQLAQKEESSLNEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFG 801
            +T SL +P+ CF  +      S         P MPP D++P  Y   +   +L   K  LSP     + +PL +  G +++LFD  G RYLD F GI TV  GHCHP V  +   Q+ R+ H++ ++ +  I ++AE L++ +P  LKVVF  NSG+EAN+LA++MAR ++   DIIS R AYHG +  T+G T    +K ++    G    + PD + G +G
Sbjct:   15 KTLSLWIPKTCFSLKARAFWTSVTRCGLHTKPSMPPCDFTPERYQSLAYSRVLEIHKQHLSPVHTAYFPEPLLLHQGHVEWLFDHEGNRYLDFFSGIVTVSVGHCHPKVNAAAQRQLGRLWHTSSVFFHPLIHEYAEKLSALLPEPLKVVFLVNSGSEANDLAMLMARAHSNSTDIISFRGAYHGCSPYTLGLTNVGIYKMDLPHGMGCQPTMCPDIFHGPWG 237          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AT2L1_XENLA (Alanine--glyoxylate aminotransferase 2-like 1 OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 73/197 (37.06%), Postives = 114/197 (57.87%), Query Frame = 1
Query:  283 DEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-----QTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 843
            ++I+  RK  + PS    ++  P+ +V  K QY+FDE G RYLD    +A V  GH HP V  + + Q++ +  ++  +L+  +  +AE L S +P  L V +F NSG+EAN+LA+ +AR YTG  D+I+L +AYHG+    +     S +KF+ +     +  +H A +PD YRG +  D       YAKDV+D+I
Sbjct:    8 EKIMEIRKKHIGPSCKVFFANDPIKIVHAKGQYMFDEKGERYLDCINNVAHV--GHSHPEVTKAALKQMELLNTNS-RFLHDNLVRYAECLISTLPEKLSVCYFVNSGSEANDLALRLARQYTGHQDVITLDHAYHGHVTSLIDI---SPYKFHQLGKDAQKEYIHVAPSPDTYRGKYREDHPDPASAYAKDVEDII 198          
BLAST of CF838605 vs. ExPASy Swiss-Prot
Match: AT2L1_HUMAN (Alanine--glyoxylate aminotransferase 2-like 1 OS=Homo sapiens GN=AGXT2L1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.692e-27
Identity = 73/198 (36.87%), Postives = 116/198 (58.59%), Query Frame = 1
Query:  277 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 843
            S  + L  RK  + PS    + S P+ +V  + QY+FDENG +YLD    +A V  GHCHP VV + + Q++ +  ++  +L+  I ++A+ L++ +P  L V +FTNSG+EAN+LA+ +AR + G  D+I+L +AYHG+ +  +     S +KF    +V +  VH A  PD YRG +  D       YA +V+ +I
Sbjct:    6 SKRDTLGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVAHV--GHCHPGVVKAALKQMELLNTNS-RFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEI---SPYKFQKGKDVKKEFVHVAPTPDTYRGKYREDHADSASAYADEVKKII 197          
The following BLAST results are available for this feature:
BLAST of CF838605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
AGT23_ARATH5.728e-10372.29Alanine--glyoxylate aminotransferase 2 homolog 3, ... [more]
AGT22_ARATH2.843e-10272.47Alanine--glyoxylate aminotransferase 2 homolog 2, ... [more]
AGT21_ARATH2.502e-8267.32Alanine--glyoxylate aminotransferase 2 homolog 1, ... [more]
AGT2_PONAB5.462e-3742.19Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_HUMAN5.462e-3742.19Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_RAT6.039e-3641.58Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_MOUSE1.030e-3542.11Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_BOVIN6.677e-3537.22Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AT2L1_XENLA1.032e-2737.06Alanine--glyoxylate aminotransferase 2-like 1 OS=X... [more]
AT2L1_HUMAN6.692e-2736.87Alanine--glyoxylate aminotransferase 2-like 1 OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838605 ID=CF838605; Name=CF838605; organism=Citrus sinensis; type=EST; length=844bp
CCGTTTCAGCGTCTCCAGCTCGCACCATAACTAAACCCGCATAAACAACA
AGACGCATAATACTGACTCCCGCATTTTCGGAATCTTTTACTGGCAGAGA
AAATGCAGAGATTCGCAGCCCGAAGGGTTTTATCGGAAACAAATTCTCTC
CGTCTGCCGCAGCGCTGCTTCTTCTCTCAGCTAGCACAGAAGGAAGAATC
ATCTCTGAACGAACATGAAACTTTTCTCCCGAGAATGCCCCCGTTCGATT
ATTCTCCCCCTCCCTACGACGGTCCGTCCGCCGATGAGATCCTCGCCAAA
CGCAAGACTTTTCTCAGCCCTTCATTGTTCCACTTGTACAGCAAACCCCT
GAACGTGGTGGATGGGAAGATGCAGTATTTGTTCGACGAAAACGGCCGTA
GATACCTGGACGCCTTCGGAGGGATTGCTACGGTCTGTTGCGGACACTGC
CATCCTTATGTGGTCGACTCAATCGTCAACCAAATCAAGCGCATACAACA
CTCCACTGTGCTTTATCTCAACCATGCAATCGCTGATTTCGCCGAGGCGT
TAGCCTCCAAAATGCCTGGCAATCTTAAGGTGGTTTTCTTTACAAATTCG
GGAACGGAAGCGAATGAGTTGGCGATAATGATGGCAAGATTATATACTGG
ATGCAATGATATAATATCACTGAGAAACGCCTATCATGGAAACGCAGCTG
GAACTATGGGCGCCACTGCTCAGTCCAACTGGAAATTTAACGTTGTTCAG
ACTGGCGTTCATCATGCCTTGAACCCCGACCCATACAGAGGAGTGTTTGG
TGCAGATGGCGAAATGTATGCTAAAGATGTTCAAGATCTCATTG
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