CF838609

Overview
NameCF838609
Unique NameCF838609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838609_ssr791 microsatellite CF838609_ssr791:791..805. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6274 contig Csv1_Contig6274:273..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC2_ARATH (NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 4.026e-82
Identity = 164/259 (63.32%), Postives = 183/259 (70.66%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSAR-KKNSLRLDDWVLCRIYNKKGSIEKQQQVTNRRPNFXXXXXXXXXKKPVVMPSGMDTSTSGGALLPNPASTVTGTGTVNDYMYFDTSDSVPKLN-TDSSCSEHVVSPEFTCEVQSEPKMQPW-------ENTLGFPYNYLDSAMDISFNSQLQGNNQLSPLQDMFMYFTKPF 750
            P LALYGEKEWYFF+PR RKYPNGSRPNR+AGSGYWKATGADKPIG PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRS R KKNSLRLDDWVLCRIYNKKG+ E++       P           +KP V    M          P P  T       +++ YFDTSDSVPKL+ TDSSCSE VVSPEFT EVQSEPK + W        NTL F +NY+D+ +D +F      +NQ+ PLQDMFMY  KP+
Sbjct:   53 PGLALYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGLPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGATERRGP-----PPPVVYGDEIMEEKPKVTEMVMP---------PPPQQT-------SEFAYFDTSDSVPKLHTTDSSCSEQVVSPEFTSEVQSEPKWKDWSAVSNDNNNTLDFGFNYIDATVDNAFGGG-GSSNQMFPLQDMFMYMQKPY 289          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC48_ORYSJ (NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.312e-76
Identity = 152/256 (59.38%), Postives = 174/256 (67.97%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIEKQQQVTNRRPNFXXXXXXXXXKKPVVMPSGMDTSTSGGALLPNPASTVTGTGTVNDYMYFD-TSDSVPKLNTDSSCSEHVVSPEFTCEVQSEPKMQPWENTLGF--PYNYLDSAMDISFN---SQLQGNNQLSPLQDMFMYFTKPF 750
            P +ALYGEKEWYFF+PR RKYPNGSRPNRAAGSGYWKATGADKP+G PKPV IKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKG +EK                    +KP+V   G++ + S     P     V G    +   Y+D  SDS+P+L+ DSSCSE V+SPEF CEVQS+PK+  WE T     P N   S +D + +     L G      LQD+ MY+ KPF
Sbjct:   55 PRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGSPKPVAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGGLEKPPAAAVAAAGM-VSSGGGVQRKPMV---GVNAAVSSP---PEQKPVVAGPAFPDLAAYYDRPSDSMPRLHADSSCSEQVLSPEFACEVQSQPKISEWERTFATVGPINPAASILDPAGSGGLGGLGGGGSDPLLQDILMYWGKPF 303          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NA102_ARATH (NAC domain-containing protein 102 OS=Arabidopsis thaliana GN=NAC102 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.212e-55
Identity = 118/217 (54.38%), Postives = 133/217 (61.29%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSA--RKKNSLRLDDWVLCRIYNKKGSIEKQQQVTNRRPNFXXXXXXXXXKKPVVMPSGMDTSTSGGALLPNPASTVTGTGTVNDYMYFDTSDSVPKLNTDSSCSEHVVSPEFTC----EVQSEPKMQPWENTL 633
            P++ALYGEKEWYFF+ R RKYPNGSRPNRAAG+GYWKATGADKPIG+PK +GIKKALVFYAGKAPKG KTNWIMHEYRLA+VDRSA   KKN+LRLDDWVLCRIYNKKG++EK       +P                    M TS                                     DS CS HV+SP+ TC    EV+SEPK    E+ L
Sbjct:   96 PEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSASTNKKNNLRLDDWVLCRIYNKKGTMEKYLPAAAEKPT-----------------EKMSTS-------------------------------------DSRCSSHVISPDVTCSDNWEVESEPKWINLEDAL 258          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC71_ORYSJ (NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.927e-53
Identity = 112/215 (52.09%), Postives = 133/215 (61.86%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKK-------NSLRLDDWVLCRIYNKKGSIEKQQQVTNRRPNFXXXXXXXXXKKPVVMPSGMDTSTSGGALLPNPASTVTGTGTVNDYMYFDTS----------------DSVPKLNTDSSCSEHVVSP 576
            P+ A+ GEKEWYFF+PR RKYPNG RPNRAAG+GYWKATGADKP+G P+ V IKKALVFYAGK PKG KTNWIMHEYRLADVDRSA  +       N+LRLDDWVLCRIYNKKG IE+   V                    V P+    +  GG +     +       ++DY ++D                  DS+P+L+TDSS SEHV+SP
Sbjct:   55 PERAMGGEKEWYFFSPRDRKYPNGQRPNRAAGTGYWKATGADKPVGSPRAVAIKKALVFYAGKPPKGVKTNWIMHEYRLADVDRSAAARKLSKSSHNALRLDDWVLCRIYNKKGVIERYDTVDAGED---------------VKPAAAAAAAKGGRIGGGGGAAAMKV-ELSDYGFYDQEPESEMLCFDRSGSADRDSMPRLHTDSSGSEHVLSP 253          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC68_ORYSJ (NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.496e-44
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPI---GQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRS-ARKKNSLRLDDWVLCRIYNKKGSIEK 333
            P+ AL+G KEWYFFTPR RKYPNGSRPNRAAG GYWKATGADKP+   G  + VGIKKALVFY+GKAP+G KT+WIMHEYRLAD DR+   KK S +LD+WVLCR+YNKK + EK
Sbjct:   67 PEKALFGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAPRGVKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNWEK 181          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC19_ARATH (NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.503e-41
Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPIG-QPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIEKQ 336
            P+ AL+GEKEWYFF+PR RKYPNGSRPNR AGSGYWKATG DK I  + + VGIKKALVFY GKAPKG KTNWIMHEYRL +    +R+  S +LDDWVLCRIY K+ S +KQ
Sbjct:   60 PNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIE---PSRRNGSTKLDDWVLCRIYKKQSSAQKQ 169          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC55_ARATH (NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.882e-41
Identity = 80/113 (70.80%), Postives = 90/113 (79.65%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPIG-QPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIEKQ 336
            P  AL+GEKEWYFF+PR RKYPNGSRPNR AGSGYWKATG DK I  + + VGIKKALVFY GKAPKG KTNWIMHEYRL +    +R+  S +LDDWVLCRIY K+ S +KQ
Sbjct:   60 PSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIE---PSRRNGSTKLDDWVLCRIYKKQTSAQKQ 169          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.503e-40
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPI-GQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIEKQ 336
            P  AL+GEKEWYFF+PR RKYPNGSRPNR AGSGYWKATG DK I    + VGIKKALVFYAGKAPKG KTNWIMHEYRL +  RS     S +LDDWVLCRIY K    ++Q
Sbjct:   60 PSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRLIEHSRS---HGSSKLDDWVLCRIYKKTSGSQRQ 169          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC67_ORYSJ (NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.892e-39
Identity = 79/116 (68.10%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPI-GQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVD--RSARKKNSLRLDDWVLCRIYNKKGSIEKQQ 339
            P  AL+G +EWYFFTPR RKYPNGSRPNRAA SGYWKATGADKP+    +  GIKKALVFY GK P+G KT WIMHEYRLA      +A    +LRLDDWVLCR+YNKK   EK Q
Sbjct:   63 PHRALFGRREWYFFTPRDRKYPNGSRPNRAAASGYWKATGADKPVLHNGRTAGIKKALVFYHGKPPRGVKTEWIMHEYRLAKKGGAAAAAGAGALRLDDWVLCRLYNKKNEWEKMQ 178          
BLAST of CF838609 vs. ExPASy Swiss-Prot
Match: NAC18_ARATH (NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.215e-39
Identity = 78/118 (66.10%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 PDLALYGEKEWYFFTPRHRKYPNGSRPNRAAGSGYWKATGADKPI-----GQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLAD-----VDRSARKKNSLRLDDWVLCRIYNKKGS 324
            P  A +GE+EWYFF+PR RKYPNG+RPNRAA SGYWKATG DKP+     G  K VG+KKALVFY+GK PKG K++WIMHEYRL D     +     KKNSLRLDDWVLCRIY K  S
Sbjct:   63 PAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGVKSDWIMHEYRLTDNKPTHICDFGNKKNSLRLDDWVLCRIYKKNNS 180          
The following BLAST results are available for this feature:
BLAST of CF838609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
NAC2_ARATH4.026e-8263.32NAC domain-containing protein 2 OS=Arabidopsis tha... [more]
NAC48_ORYSJ4.312e-7659.38NAC domain-containing protein 48 OS=Oryza sativa s... [more]
NA102_ARATH3.212e-5554.38NAC domain-containing protein 102 OS=Arabidopsis t... [more]
NAC71_ORYSJ3.927e-5352.09NAC domain-containing protein 71 OS=Oryza sativa s... [more]
NAC68_ORYSJ1.496e-4473.04NAC domain-containing protein 68 OS=Oryza sativa s... [more]
NAC19_ARATH4.503e-4170.80NAC domain-containing protein 19 OS=Arabidopsis th... [more]
NAC55_ARATH5.882e-4170.80NAC domain-containing protein 55 OS=Arabidopsis th... [more]
NAC72_ARATH6.503e-4070.80NAC domain-containing protein 72 OS=Arabidopsis th... [more]
NAC67_ORYSJ1.892e-3968.10NAC domain-containing protein 67 OS=Oryza sativa s... [more]
NAC18_ARATH4.215e-3966.10NAC domain-containing protein 18 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06B01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838609 ID=CF838609; Name=CF838609; organism=Citrus sinensis; type=EST; length=810bp
CCAGATTTGGCCCTGTACGGGGAAAAGGAGTGGTACTTTTTTACGCCTAG
GCATCGGAAGTATCCAAACGGTTCAAGGCCGAACCGGGCGGCGGGGAGCG
GGTACTGGAAGGCAACAGGAGCCGATAAGCCGATTGGCCAGCCGAAGCCC
GTTGGAATTAAGAAGGCTCTTGTTTTTTACGCCGGAAAAGCGCCTAAAGG
AGAGAAAACCAACTGGATTATGCACGAGTATCGGTTAGCTGACGTGGATC
GCTCGGCTCGTAAGAAGAACAGCTTAAGGCTGGACGATTGGGTGCTGTGT
CGCATATACAACAAGAAGGGATCTATTGAGAAACAACAGCAGGTCACTAA
TCGGAGGCCGAATTTTACGGAGACGGAGACGGAGACGGAGGAGAAGAAAC
CGGTGGTTATGCCAAGTGGCATGGACACGTCAACGTCAGGAGGAGCACTG
CTTCCGAATCCGGCGTCGACCGTAACGGGAACGGGAACAGTGAATGATTA
CATGTATTTTGACACGTCGGATTCGGTGCCGAAGCTGAACACGGACTCGA
GTTGCTCGGAGCACGTGGTGTCACCGGAGTTCACGTGCGAGGTGCAGAGC
GAGCCTAAAATGCAACCCTGGGAAAACACCCTTGGTTTTCCATATAATTA
CTTGGATTCCGCCATGGACATAAGCTTCAATTCTCAGTTGCAGGGAAACA
ATCAGCTGTCGCCGTTGCAGGATATGTTCATGTACTTTACGAAACCCTTT
TAAATTTGGGTCGAGTGGATGGACCATAGACGGGATGGGATGGGCTGGGC
TGGGCTGGCC
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