CF838641

Overview
NameCF838641
Unique NameCF838641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838641_ssr610 microsatellite CF838641_ssr610:610..624. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838641 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.032e-17
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = -3
Query:  311 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMSGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 592
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CF838641 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = -3
Query:  305 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMSGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 592
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E SG+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CF838641 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 41/100 (41.00%), Postives = 53/100 (53.00%), Query Frame = -3
Query:  305 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMSGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 592
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + S SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
BLAST of CF838641 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 41/100 (41.00%), Postives = 51/100 (51.00%), Query Frame = -3
Query:  305 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMSGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 592
            MARS S+ K   A V D +  +I +RGYS A                 + ++ A + S SSE      +W PDPVTG YRPEN   E+D ADLR M L H
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNH 100          
The following BLAST results are available for this feature:
BLAST of CF838641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARG2_PHAAU9.032e-1750.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI7.913e-1346.88Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI5.129e-1241.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI3.324e-1141.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06C14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838641 ID=CF838641; Name=CF838641; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTTATACTTATATGGAATAATAAATCATCATTTATTTCCGAAAAA
TGCCATCTAAAAAACAGGAATGTTACATGCAATACAAAATCTAGTTTGGA
TCCCCAAGTCGAAACAGAGAGAACAGGGGAGCTGCAGCTGCTACGCCAAT
TTCCCGGAATTCCTCGAGAGCTCATGCGGCTGACCACATCAGAACAAATC
CCTTTTTAATCTTTTTTTAATTTTTCTTTCGTCCTTCCTCAGTTTCCATG
TCCGAATTAATATATATTAATAATAATACTTATTAATTTTGATGATCAGT
TGTTGTGCTTCAAGAACATGGCTCTGAGGTCGGCCCCATCGAGCTCGTTG
GCGAGATTCTCCGGCCTGTAGACACCAGTGACTGGGTCTGGGACCCACGA
GACCTTCTCACTGGATCCTGACATCTCTTCTGCTGGTTTCTTCAACATCG
CAGCAGCACTCCTAGCTCCCCCTGTTGCCCGCGACACAGCGCCTTGTGAT
GCCGCCGAGTATCCTCTTTTGTAGATGGCGTTAGAGATTCCGTCAGCGAC
GAAAGCAGAGAAAAGCTTAGCGTTTGAGAAAGAGCGAGCCATTTTTCTTA
GTTATGTGGGATGATGATGATGATAAGAGATCTTAACGCTGCTGCAGAAA
GCAATTTCCTTCTATTCTTTCTATCGAAAAGCCTTCAACAGCAGCTAAAG
AAACTTCCCTCTTCGTAGCGCGAAAATCCCCTCAAAGCGTTCTTAAATTA
TCTTTTCCC
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