CF838643

Overview
NameCF838643
Unique NameCF838643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig837 contig Csv1_Contig837:680..1505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF838643 vs. ExPASy Swiss-Prot
Match: YO092_YEAST (Uncharacterized membrane protein YOL092W OS=Saccharomyces cerevisiae GN=YOL092W PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.844e-14
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 2 
Query:  473 QWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCVLLDLFIILQYIYYRYFRK 748
            Q  G+L A +Y+G R+PQI LN KR S EG++ L F+FA + N T++ S++V + +W+ +  N  WL+ +I  + +D  I  Q+  Y+  +K
Sbjct:  213 QIFGYLSALLYLGSRIPQILLNFKRKSCEGISFLFFLFACLGNTTFIFSVIVISLDWKYLIMNASWLVGSIGTLFMDFVIFSQFFIYKRNKK 304
The following BLAST results are available for this feature:
BLAST of CF838643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YO092_YEAST4.844e-1438.04Uncharacterized membrane protein YOL092W OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06C17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838643 ID=CF838643; Name=CF838643; organism=Citrus sinensis; type=EST; length=826bp
TTTTCAGAGACCTTAAGGCCGCCACACTAAAGCTACACGAAGGGAGGAGG
ACTAGAAAAAACCTTTGGCACCTAAGTCAGGTGACGCGGCCATTCCCATT
CCCAAGGCATCAGTAAAATCATCTCCTCGAAGAGAGTATTACTACACGTC
AGCAAGATCGTTAGCAAGCAGTGGCACTCCTCCATTTCGCACGTTTCTCA
GAGCAGCGCAAAGTGGGCCTTCAGCTTTGGGACTTGACAACGATTCCTCG
TCGGATGATGAGGCGGCAGCAGCGGCTCCCACGCTTTCATCTTCTGGGAA
CCCACCGACTAGCCAGCCCAGGCCCATCCCAAGATCTGCTGGTTATGGAA
CGTTTCTTGCTGCATCTGTTAACCTTCCTTTCCAAAGTAATGCACTGGCG
GGAGCTATGGCAGCTGGGTTTCATTCAAGAACACTTTTAAACGGAAATAA
CATGGAGCACAGTGCTTTTGGACAATGGCTGGGATGGCTGATGGCAGCTA
TTTACATGGGCGGCCGTCTCCCCCAAATATGGCTAAACATTAAAAGAGGG
AGCGTGGAGGGTCTCAATCCTCTCATGTTCGTGTTTGCATTAGTCGCGAA
TGTCACTTACGTTTTAAGTATTGTTGTGAGAACCACGGAATGGGAAAGTA
TAAAGGCAAATATGCCATGGTTGCTGGATGCCATTGTCTGCGTGTTGCTC
GACTTATTTATTATACTGCAGTACATCTATTACAGGTATTTCAGAAAGAA
AAGTACGGATTATGGAGAAGATGACGACGGCGACTATATGGATGCAACTA
AAGCAAATGATTAATCTTAATTGCTC
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