CF838650

Overview
NameCF838650
Unique NameCF838650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1000..1697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.575e-70
Identity = 128/136 (94.12%), Postives = 135/136 (99.26%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRGFVASNS+DDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  301 KNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.358e-69
Identity = 128/136 (94.12%), Postives = 135/136 (99.26%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRG+VASNS+DDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.742e-69
Identity = 127/136 (93.38%), Postives = 133/136 (97.79%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRG+VAS S+DDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  301 KNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.502e-68
Identity = 125/136 (91.91%), Postives = 133/136 (97.79%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLK G VASNS+DDPA++AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  301 KNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.962e-68
Identity = 125/136 (91.91%), Postives = 134/136 (98.53%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRG+VASNS+DDPA+EAANFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.562e-68
Identity = 125/136 (91.91%), Postives = 133/136 (97.79%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRG+VASNS+DDPA+ AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTG
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.370e-68
Identity = 126/136 (92.65%), Postives = 132/136 (97.06%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRG VASNS+DDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP+G
Sbjct:  301 KNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.707e-68
Identity = 124/136 (91.18%), Postives = 134/136 (98.53%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRGFVASNS+DDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDPTG
Sbjct:  301 KNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.454e-68
Identity = 125/136 (91.91%), Postives = 131/136 (96.32%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRG+VASNS+DDPA+EAANFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  301 KNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF838650 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.271e-67
Identity = 126/136 (92.65%), Postives = 131/136 (96.32%), Query Frame = 2 
Query:    2 KNVAFKDLKRGFVASNSQDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 409
            KNVA KDLKRGFVASNS+DDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELE  PKFLKNGDAG+VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK VEKKDPTG
Sbjct:  301 KNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTG 436
The following BLAST results are available for this feature:
BLAST of CF838650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_VICFA3.575e-7094.12Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_ORYSJ1.358e-6994.12Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE6.742e-6993.38Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_PEA1.502e-6891.91Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN1.962e-6891.91Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH2.562e-6891.91Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_MANES4.370e-6892.65Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC5.707e-6891.18Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A2_DAUCA7.454e-6891.91Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_WHEAT1.271e-6792.65Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838650 ID=CF838650; Name=CF838650; organism=Citrus sinensis; type=EST; length=698bp
GAAGAACGTTGCTTTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACT
CCCAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATC
ATCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGA
CTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGA
TTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAG
AATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGT
TGAAACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACA
TGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGAT
CCCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAAT
TTTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTA
TTTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTAT
TTGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTT
AACTGGCTGTGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATA
GCACTAAATTGAGTTGTGAAGTTTAAAAAAANAAAAAAAAAAAAAAAA
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