CF838680

Overview
NameCF838680
Unique NameCF838680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10620 contig Csv1_Contig10620:25..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.076e-30
Identity = 76/190 (40.00%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  130 RLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNIPANYYGVSKFGILGLVKSLAAELGRYGIRVDCVS 699
            +L G+V               +LF K+GA+VV+AD+QD LG +L  +LG     Y+HCDV+NE +V   VD  VA+FGKLD++ N+   +       + +  K D ER+LAVN +G FL  KHAARVM P RRG I+          +    +    ++ Y  SK  ++G  ++ A ELGR+GIRV+CVS
Sbjct:   14 KLVGKVAVITGGASGIGACTARLFVKHGARVVVADIQDELGASLVAELGPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNN-AGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAPARRGSII-------STASLSSSVSGAASHAYTTSKHALVGFTENAAGELGRHGIRVNCVS 195          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 78/204 (38.24%), Postives = 105/204 (51.47%), Query Frame = 1
Query:  124 SIRLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKL----GHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNI--------PANYYGVSKFGILGLVKSLAAELGRYGIRVDCVS 699
            S RL G+V               +LFHK+GAKV I D+QD+LG  +   L      +   +IH DV  E ++ N VD  V  FG LDIL+N+   L       I +   S+ E    VN  G FL  KHAARVM+P ++G I+               LC++        P +Y G SK  +LGL +S+AAELG++GIRV+CVS
Sbjct:   15 SQRLLGKVALITGGATGIGESIVRLFHKHGAKVCIVDLQDDLGGEVCKSLLRGESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNA-GLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMIPEKKGSIV--------------SLCSVGGVVGGVGPHSYVG-SKHAVLGLTRSVAAELGQHGIRVNCVS 202          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.274e-23
Identity = 74/193 (38.34%), Postives = 104/193 (53.89%), Query Frame = 1
Query:  130 RLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFG-KLDILVNSGCNL--EYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNIPANYYGVSKFGILGLVKSLAAELGRYGIRVDCVS 699
            RL G+V               +LF K+GA+VVIAD+ D  G+ALA  LG Q V ++ CDVS E +V   VD  +++ G +LD+  N+   L  + R   SIL    ++ +R+L VN +G  L  KHAAR M PRR G I+          +    L  +  + Y  SK  I+GL K+ A EL  +G+RV+CVS
Sbjct:   52 RLDGKVAIVTGGARGIGEAIVRLFAKHGARVVIADIDDAAGEALASALGPQ-VSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIV-------SVASVAAVLGGLGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVS 236          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.733e-16
Identity = 58/191 (30.37%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  133 LQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQ--DVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNIPANYYGVSKFGILGLVKSLAAELGRYGIRVDCVS 699
            L+G+V               QLF +NG KVVIA++ +  G    + L  +  DV ++  DV++E  V N+V  TV  +G +D+LVN+   +  +   SI + P  + ER++ VN  G ++ +++ A  M+ R  G I+                       Y  SK G++ L  SLA  L RY IRV  +S
Sbjct:    2 LEGKVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAGVEREEMLRERGLDVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVK---SIFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVIINIASTRAFQSEP-------DTEPYSASKGGLVALTHSLAVSLSRYHIRVVSIS 182          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  193 QLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNIPANYYGVSKFGILGLVKSLAAELGRYGIRVDCV 696
            Q F    A VV+AD+ +  G+A+  K  +  + ++H D+++E    N + + V KFG LD+L+N   N        I +   S+  ++L VN  G FL++KHA + M+   +G I+        +   +    +IPA  Y  SK G+L L +S+A +  ++ IRV+CV
Sbjct:   23 QAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHTDITDEPACQNAIRSAVDKFGGLDVLIN---NAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNII-----NTCSVGGVVAWPDIPA--YNASKGGVLQLTRSMAVDYAKHNIRVNCV 180          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 62/193 (32.12%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  127 IRLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQ--DVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNIPAN-YYGVSKFGILGLVKSLAAELGRYGIRVDCV 696
            +  QG+V                +F + GAKV I D+ +  G+   + +     +  +I  DV+ + E I  V  TV  FG+LDILVN+   + Y    +I +T + D ++ +AVN  G FL++K+A   M  +  G I+          +   GL  IP    Y VSK  +LGL +SLA +   YGIRV+ V
Sbjct:    1 MNFQGKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGEAAFIFGDVAKDAEQI--VKKTVETFGRLDILVNNAGIVPYG---NIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNV--------SSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAV 180          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 56/171 (32.75%), Postives = 91/171 (53.22%), Query Frame = 1
Query:  193 QLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLC---NIPANYYGVSKFGILGLVKSLAAELGRYGIRVDCV 696
            Q F    A VV+AD+ +  G+A+  K  +  + ++  D+++E    + V++ V  FG LD+L+N   N        I +   SD  ++L VN  G FL++KHA + M+   +G I+         C+ + GL    +IPA  Y  SK G+L L KS+A +  ++ IRV+CV
Sbjct:   23 QAFLGQQANVVVADIDEAQGEAMVRKENNDRLHFVQTDITDEAACQHAVESAVHTFGGLDVLIN---NAGIEIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNII-------NTCS-VGGLVAWPDIPA--YNASKGGVLQLTKSMAVDYAKHQIRVNCV 180          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 64/193 (33.16%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  121 LSIRLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNIPANY-YGVSKFGILGLVKSLAAELGRYGIRVDCV 696
            +S RL G+V               +     GAKVV  D+ D  G+A+A +L      Y+H DV+   +    VDT V  FG L +LVN   N       +I D   ++ +R+L VN  G FL  +   + M    RG I+          + IEGL    A + Y  +KF + GL KS A ELG  GIRV+ +
Sbjct:    1 MSGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADA-ARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVN---NAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINI--------SSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSI 181          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 64/193 (33.16%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  121 LSIRLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNIPANY-YGVSKFGILGLVKSLAAELGRYGIRVDCV 696
            +S RL G+V               +     GAKVV  D+ D  G+A+A +L      Y+H DV+   +    VDT V  FG L +LVN   N       +I D   ++ +R+L VN  G FL  +   + M    RG I+          + IEGL    A + Y  +KF + GL KS A ELG  GIRV+ +
Sbjct:    1 MSGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADA-ARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVN---NAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINI--------SSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSI 181          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12
Identity = 51/171 (29.82%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  193 QLFHKNGAKVVIADVQDNLGQALADKLGHQDVCY-IHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCN-IPANYYGVSKFGILGLVKSLAAELGRYGIRVDCVS 699
            Q F   GA+VV+ DV     +  A +LG  DV   + CDV+   +V  L+ T V +FG LD++VN   N       ++    +   ++++AV+  G +   + AA +M  R+RG I+          + + G    +    Y  +K GI+G+ K+ A EL   GIRV+ ++
Sbjct:   25 QRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVN---NAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIV--------NMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIA 184          
The following BLAST results are available for this feature:
BLAST of CF838680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MOMAS_ORYSJ1.076e-3040.00Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
ABA2_ARATH3.353e-2438.24Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
TS2_MAIZE1.274e-2338.34Sex determination protein tasselseed-2 OS=Zea mays... [more]
Y019_THEMA5.733e-1630.37Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
BACC2_BACSU2.845e-1531.55Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
Y325_THEMA1.081e-1432.12Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
BACC_BACSU1.844e-1432.75Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
HSD_MYCTU4.109e-1433.163-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO4.109e-1433.163-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
Y1385_MYCBO5.023e-1229.82Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06E15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838680 ID=CF838680; Name=CF838680; organism=Citrus sinensis; type=EST; length=883bp
GGAAATAATCACCATCCAAACCTTTTCTTTTACAATCTTGATTGAGTTTC
CCGTTTTTGAGGAAATTTTTTTACACAGGCTTGTAGTACTACTGCAGCAG
CACCCTGCGAAAGGTATCAACTAAGCATTCGGTTACAAGGCAGAGTGGCA
ATCATTACTGGCGGAGCAAGCGGGATCGGAGCATCTGCGGCTCAGCTTTT
CCACAAAAATGGAGCCAAAGTTGTCATAGCCGATGTGCAAGATAATCTTG
GCCAAGCCCTAGCCGATAAGCTAGGCCACCAGGATGTCTGCTACATCCAT
TGTGATGTATCAAATGAAAGGGAAGTCATCAATCTTGTTGATACCACCGT
TGCTAAATTCGGAAAGCTCGACATCCTGGTCAATAGCGGATGCAATCTTG
AGTATCGTGGCTTCGTGAGCATTTTGGACACCCCAAAGTCCGATCTAGAA
CGTTTACTGGCTGTGAACACAATTGGTGGTTTCTTAGTAGCCAAGCATGC
TGCAAGAGTCATGGTGCCACGCCGCAGAGGTTGCATATTGTATACAACGG
GTACAGGCACTACTGCTTGTACGGAAATTGAAGGTTTGTGCAATATTCCA
GCTAATTATTATGGAGTGTCAAAATTTGGGATCTTGGGACTTGTCAAGAG
CTTAGCGGCAGAGCTTGGACGGTATGGAATAAGAGTAGATTGCGTATCGC
ATACTTATGGCTTGGCAATGGCTGAAGCGATAGCATCAATAGCAAACGCT
GCGCTTTACAATATGGCTAAAGATGATGATACAAGTTATGTGGGTAAGCA
AAATCTTCTTGTCAATGGAGGATTCAGATGAGAGTTGTGAATCCTACCCT
CCGAGAGAGCTTTCAATCGATGAAAAAAGTTTC
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