CF838686

Overview
NameCF838686
Unique NameCF838686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5340 contig Csv1_Contig5340:83..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: PPF1_PEA (Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 5.594e-83
Identity = 166/254 (65.35%), Postives = 181/254 (71.26%), Query Frame = 3
Query:    3 KTLPLTPPFVGTXXXXXXXXXXRHGLHRL--PNRRLASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWL 758
            KTL  +P F+GT             LHR   PNR    T+V+ SF +             + +F+R E LLY                         QKNGGWFGFIS+ MEFVLK+LKDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL GPT+IAARQSGSGISWL
Sbjct:    3 KTLISSPSFLGTPLP---------SLHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSVDLSGIFARAEGLLYTLADATVAADAAASTDVAA------QKNGGWFGFISDGMEFVLKVLKDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWL 241          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: ALB3_ARATH (Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 2.350e-81
Identity = 159/228 (69.74%), Postives = 173/228 (75.88%), Query Frame = 3
Query:   81 HRLPNRRL--ASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWL 758
            +R  N +L   ST VR S  E              ++F+R ESLLY                         QK+GGWFGFIS+AME VLKILKDG+ AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IAARQSGSGISWL
Sbjct:   40 YRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDSSAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWL 263          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: ALB31_ARATH (ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3)

HSP 1 Score: 256.529 bits (654), Expect = 1.132e-67
Identity = 121/156 (77.56%), Postives = 143/156 (91.67%), Query Frame = 3
Query:  291 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWL 758
            ++  WF  I+  ME +LK+LKDG+  VHVPYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+RLY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+GSGISWL
Sbjct:   92 QSNDWFSGIANYMETILKVLKDGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWL 247          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: ALB32_CHLRE (Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.306e-54
Identity = 101/155 (65.16%), Postives = 126/155 (81.29%), Query Frame = 3
Query:  297 GGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLL 761
            GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVATFPLT+KQVESTL++Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY ALSN A EGLLTEGFFWIPSL GPTTI     G G+ WL+
Sbjct:   71 GGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVESTLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNALSNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLV 220          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: ALB31_CHLRE (Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.292e-52
Identity = 97/158 (61.39%), Postives = 134/158 (84.81%), Query Frame = 3
Query:  288 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLL-TEGFFWIPSLSGPTTIAARQSGSGISWL 758
            Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T+PLTK+QVES +A+Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATIP++IGL+ +L+NVAN+GLL T+GF+++PSL+GPTT+A RQSG G SWL
Sbjct:  108 QRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTYPLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATIPIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWL 265          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: OXAA_ANADF (Inner membrane protein oxaA OS=Anaeromyxobacter sp. (strain Fw109-5) GN=oxaA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  306 FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGIS 752
            F F +  + FV++ L+       +  ++G AIILLTV+VKV  +PLT K ++S   M+ LQP+I+ ++ ++  ++E++ L T +LY+Q  VNPL GCLP L  +P+W  LY  L       L  E F WI  L+    +       G+S
Sbjct:  337 FAFFARLLLFVMRWLE------RLVANWGLAIILLTVLVKVLLYPLTAKSMQSMNEMRKLQPEIEKLKAKHGNDREKLNLATMQLYQQHKVNPLGGCLPMLIQLPIWFALYATLQTSVE--LYREPFLWIHDLTVKDPLYVLPIAMGVS 477          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: OXAA_SYNFM (Inner membrane protein oxaA OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=oxaA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.022e-20
Identity = 53/139 (38.13%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF-FWIPSLSGP 713
            GWF FI++ + +VL             +++G AIILLT+++K+  +PLT+K  +S   M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+ L+      L  E F  WI  L+ P
Sbjct:  338 GWFTFIAKPLVYVLDWF------YRYTHNWGVAIILLTIVIKILFWPLTQKSYQSMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYRMLNGAVE--LRHEPFMLWIDDLTAP 468          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: OXAA_PELPD (Inner membrane protein oxaA OS=Pelobacter propionicus (strain DSM 2379) GN=oxaA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.946e-20
Identity = 55/147 (37.41%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSG 740
            GWF  I++ + + LK     +       +YG AII++T+I+K   FPLT K  +S   MQ +QP + A++++Y  ++E +      LYR   VNPL GCLP L  IPV+  LY+AL   + E      +FWI  LSGP  +  +  G
Sbjct:  326 GWFTVIAKPLLYTLKYFYRYVG------NYGVAIIIITIILKALFFPLTHKSYKSMKDMQKIQPMMAALKEKYKDDREGMNKAVMELYRDHKVNPLGGCLPMLVQIPVFFALYKALM-FSIELRHAPFYFWITDLSGPDNLFGQMLG 465          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: OXAA_CHLT3 (Inner membrane protein oxaA OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=oxaA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.946e-20
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  384 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTI 722
            SYG  IIL  + +K+ T+PLT    +S   M  LQP++KAIQ++Y  N E++Q E S +YR+AGVNPL GCLPT+  +P+   ++    +     L  EGF W   LS P +I
Sbjct:  369 SYGVIIILFALFIKLVTYPLTMASTKSMKKMAALQPQLKAIQEQYKDNPEKLQAEISGIYREAGVNPLGGCLPTVIQMPLLFAMFYVFRSSIQ--LRQEGFLWSNDLSVPDSI 479          
BLAST of CF838686 vs. ExPASy Swiss-Prot
Match: OXAA_CLOTE (Membrane protein oxaA OS=Clostridium tetani GN=oxaA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.148e-19
Identity = 44/121 (36.36%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  381 YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 743
            YSYG AII +T+I+K+   PL  K + ST+ +  +QP+I+ IQ++Y  + +R+Q E  +LY++  +NP   CLP L   P+ I LY   +N+  +G+    F W+  L+ P  + A  +G+
Sbjct:   28 YSYGVAIIFVTLIIKLILLPLNIKSMRSTIRINEIQPEIQKIQKKYKNDPQRLQQEQMKLYKEYNINPFGSCLPLLLQWPILIALYYVFNNI--QGISGVSFLWVKDLASPDIVLAVLAGA 146          
The following BLAST results are available for this feature:
BLAST of CF838686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PPF1_PEA5.594e-8365.35Inner membrane protein PPF-1, chloroplastic OS=Pis... [more]
ALB3_ARATH2.350e-8169.74Inner membrane protein ALBINO3, chloroplastic OS=A... [more]
ALB31_ARATH1.132e-6777.56ALBINO3-like protein 1, chloroplastic OS=Arabidops... [more]
ALB32_CHLRE9.306e-5465.16Inner membrane ALBINO3-like protein 2, chloroplast... [more]
ALB31_CHLRE2.292e-5261.39Inner membrane ALBINO3-like protein 1, chloroplast... [more]
OXAA_ANADF1.356e-2036.24Inner membrane protein oxaA OS=Anaeromyxobacter sp... [more]
OXAA_SYNFM3.022e-2038.13Inner membrane protein oxaA OS=Syntrophobacter fum... [more]
OXAA_PELPD3.946e-2037.41Inner membrane protein oxaA OS=Pelobacter propioni... [more]
OXAA_CHLT33.946e-2043.36Inner membrane protein oxaA OS=Chloroherpeton thal... [more]
OXAA_CLOTE1.148e-1936.36Membrane protein oxaA OS=Clostridium tetani GN=oxa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06E21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838686 ID=CF838686; Name=CF838686; organism=Citrus sinensis; type=EST; length=762bp
CGAAAACTCTGCCTTTAACTCCACCGTTCGTCGGCACACCACTCCCTTCA
CCCCCATCGTCACTCTCTCGCCACGGGCTCCACCGGCTTCCTAACCGTAG
ACTCGCCTCCACCAGAGTTAGACTCAGCTTCCAAGAAATTCCCCCAATTC
TCTCCCTCGACTCTTCTATCGATCTCAACTCAGTTTTTAGTCGAACTGAG
AGCTTGCTTTACACGCTGGCAGACGCTGCCGTTTCACTTGATTCTGCTTC
TGGCGGAGCTGCCTCCACGTCAGCTGATGGGGCTACGCAGAAAAACGGCG
GCTGGTTCGGTTTTATCTCTGAAGCTATGGAATTCGTTCTCAAGATATTG
AAGGATGGGATTGATGCTGTTCATGTGCCGTATTCATATGGTTTTGCAAT
AATTTTGTTGACAGTTATTGTTAAAGTTGCCACATTTCCTTTAACAAAGA
AACAGGTGGAATCAACATTAGCAATGCAAAACCTTCAACCTAAGATCAAA
GCTATTCAACAAAGATATGCTGGCAATCAGGAAAGAATACAGCTTGAGAC
ATCACGTTTATACAGGCAGGCTGGGGTTAATCCATTAGCAGGTTGTTTGC
CAACATTGGCTACTATACCAGTCTGGATAGGTCTCTATCAAGCTCTTTCA
AATGTGGCAAATGAGGGTTTGTTAACAGAAGGTTTCTTTTGGATACCCTC
ATTGTCTGGGCCAACTACGATTGCTGCTCGACAAAGTGGATCTGGCATTT
CCTGGCTCTTAC
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