CF838719

Overview
NameCF838719
Unique NameCF838719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length249
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 9.973e-32
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 3
Query:    3 PGIPTSACKPLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDCGGSLFCNGISGTPPATLAEITLG 245
            PGI  SA + LLA GGFKLP NK ++++LPPLWSGRFWGRHGC F+ SGRG CATGDCGGSL CNG  G PPATLAEITLG
Sbjct:   35 PGIQPSAGQNLLAGGGFKLPANKAHSLQLPPLWSGRFWGRHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAEITLG 115          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.265e-18
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 3
Query:    3 PGIPTSACKPLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDCGGSLFCNGISGTPPATLAEITLG 245
            PG+  +A  P    GGF L   ++  + +P  WSGR W R GC F++ GRG CATGDCGG L CNG +G  PAT+ E+TLG
Sbjct:   43 PGLLGTAGHPTPQSGGFHLGAGEEAALEVPAGWSGRVWPRRGCSFDSRGRGSCATGDCGGVLRCNGAAGATPATVVEMTLG 123          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.196e-18
Identity = 43/71 (60.56%), Postives = 46/71 (64.79%), Query Frame = 3
Query:   30 PLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDCGGSLFCNGISGTPPATLAEITL 242
            P L  GGF+L P     +  P  WSGRFW R GC F+ASG GRC TGDCGG L CNG  G PP TLAE TL
Sbjct:   46 PKLGDGGFELTPGASRQLTAPAGWSGRFWARTGCNFDASGNGRCVTGDCGG-LRCNG-GGVPPVTLAEFTL 114          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 38/81 (46.91%), Postives = 47/81 (58.02%), Query Frame = 3
Query:    3 PGIPTSACKPLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDCG-GSLFCNGISGTPPATLAEITL 242
            PG  T   KP L+  GF+L      ++  P  WSGRFWGR  C  +A+G+  C T DCG G + CNG    PPATL EIT+
Sbjct:   39 PGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITI 119          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 3
Query:    3 PGIPTSACKPLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDCG-GSLFCNGISGTPPATLAEITL 242
            PG  T    P L   GF+L      ++ +   WSGRFWGR  C  ++SG+ +C+TGDCG G + CNG   +PPA+L E+TL
Sbjct:   37 PGTLTGGGGPQLLSTGFELASGASTSLTVQAPWSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTL 117          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 38/81 (46.91%), Postives = 47/81 (58.02%), Query Frame = 3
Query:    3 PGIPTSACKPLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDC-GGSLFCNGISGTPPATLAEITL 242
            PG  TS  KP L+  GF+L     + +  P  W+GRFW R GC  +ASG+  CAT DC  G + CNG    PPATLAE  +
Sbjct:   38 PGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNI 118          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 3
Query:   45 GGFKLPPNKDYTIRLPP-LWSGRFWGRHGCRFNASGRGRCATGDCGGSLFCNGISGTPPATLAEITLG 245
            GG +L P + +TI +P    SGR WGR GC F+ SGRG CATGDC G+L C  +SG  P TLAE T+G
Sbjct:   48 GGVQLSPGQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCAGALSCT-LSGQKPLTLAEFTIG 114          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.210e-14
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 3
Query:    3 PGIPTSACKPLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDCG-GSLFCNGISGTPPATLAEITL 242
            PG  T   KP L+   F+L      ++  P  WSGRFWGR  C  +A+G+  C T DCG G + CNG    PPATL EIT+
Sbjct:    5 PGTLTGDQKPQLSLTAFELASKASQSVDAPSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITI 85          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.498e-14
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 3
Query:    3 PGIPTSACKPLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDCG-GSLFCNGISGTPPATLAEITL 242
            PG  T   KP L+  GF+L      ++  P  WSGRF+GR  C  +ASG+  CAT DCG G + CNG    PPATL EIT+
Sbjct:   39 PGTLTGDQKPQLSLTGFELATGISRSVDAPSPWSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITI 119          
BLAST of CF838719 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.378e-14
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 3
Query:   12 PTSACKPLLARGGFKLPPNKDYTIRLPPLWSGRFWGRHGCRFNASGRGRCATGDC-GGSLFCNGISGTPPATLAEITL 242
            P S   P L+  GF+L     + +  P  WSGRFW R  C  +ASG+  C T DC  G L CNG +G PPATLAE T+
Sbjct:   38 PASFGNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTI 115          
The following BLAST results are available for this feature:
BLAST of CF838719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLPH_ARATH9.973e-3275.31Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLPH_ORYSJ1.265e-1850.62Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
PR5_ARATH8.196e-1860.56Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TP1A_MALDO1.108e-1446.91Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP1_PYRPY1.108e-1444.44Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TLP_PRUAV1.447e-1446.91Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLP_ORYSJ1.447e-1455.88Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TP1B_MALDO4.210e-1445.68Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP1_PRUPE5.498e-1448.15Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP2_PRUPE9.378e-1447.44Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838719 ID=CF838719; Name=CF838719; organism=Citrus sinensis; type=EST; length=249bp
GGCCCGGAATACCAACGAGCGCATGCAAGCCACTACTGGCACGTGGCGGC
TTCAAGCTCCCACCAAACAAGGACTACACCATACGCCTACCGCCCCTCTG
GTCCGGGCGCTTCTGGGGTCGCCATGGATGCAGGTTCAACGCCTCAGGCC
GGGGCCGCTGCGCCACCGGGGACTGCGGCGGATCGCTCTTCTGCAACGGC
ATAAGCGGTACCCCGCCGGCCACCCTCGCCGAAATCACGCTGGGGCAGC
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