CF838722

Overview
NameCF838722
Unique NameCF838722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:455..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.623e-33
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            DGS+CLDILQNQWSPIY VAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE+VEQSWTAD
Sbjct:   84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWTAD 152          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.757e-32
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            DGS+CLDILQNQWSPIY VAAILTSIQSLLCDPNPNSPANSEAARMFSE+KREYNRRVRE+VEQSWTAD
Sbjct:   84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWTAD 152          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.295e-32
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            DGS+CLDILQNQWSPIY VAAILTSIQSLLCDPNPNSPANSEAARM+SENKREYNR+VRE+VEQSWTAD
Sbjct:   84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWTAD 152          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.719e-32
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            DGS+CLDILQNQWSPIY VAAILTSIQSLLCDPNPNSPANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct:   84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.392e-29
Identity = 58/68 (85.29%), Postives = 66/68 (97.06%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 206
            DGS+CLDILQNQWSPIY +AAILTSIQSLLCDPNPNSPANSE+AR+F ENKREYNR+V+EIVEQSW++
Sbjct:   84 DGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWSS 151          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.976e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            DGS+CLDILQNQWSPIY VAA+LTSIQSLLCDPNP+SPAN+EAAR+FSENKREYNR+V EIVEQS+
Sbjct:   84 DGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQSY 149          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.740e-24
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            DGS+CLDILQN+WSP Y VAAILTSIQSLL +PNPNSPANS AA+++ EN+REY +RV++IVEQSW
Sbjct:   84 DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            DGS+CLDILQN+WSP Y V++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:   84 DGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            DGS+CLDILQN+WSP Y V++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:   84 DGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            DGS+CLDILQN+WSP Y V++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:   84 DGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
The following BLAST results are available for this feature:
BLAST of CF838722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UBC2_MEDSA4.623e-3395.65Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH1.757e-3294.20Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_WHEAT2.295e-3292.75Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC1_ARATH8.719e-3291.30Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_DICDI1.392e-2985.29Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC3_ARATH9.976e-2886.36Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC1_CAEEL8.740e-2475.76Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2B_RAT1.947e-2374.24Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.947e-2374.24Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.947e-2374.24Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838722 ID=CF838722; Name=CF838722; organism=Citrus sinensis; type=EST; length=487bp
CGGATGGAAGCCTTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATT
TACCATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCC
AAATCCAAACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGA
ACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGG
ACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGT
CCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGGTGGTGTG
AACTCTTGACATGTTTTATGTTTGTTTCGCCTTATGAGGATGGATGGTTG
GCCTCTTATTGTTAATTTCTCGTCTTTGGGTACATTGAACTCCACTCAGA
TTGTGTACATGTTATTTACTTGAGCTTGGGTCTTGATGGGACCAATATGA
AGAAGCTTGCAGGCTGTGTGCAAAAAAAAAAAAAAAA
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