CF838747

Overview
NameCF838747
Unique NameCF838747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6670 contig Csv1_Contig6670:31..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838747 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.004e-80
Identity = 91/111 (81.98%), Postives = 94/111 (84.68%), Query Frame = 2
Query:    2 MVDAKPADSMQGTPLLATATLPVFTRGIYSTKRITLETXXXXXXXXXKALIITTPAGKGTFNDILFLHGTSLSNKSYSKIFDHIPSHGFIVVAPHLYNTIPPPSATNELTA 334
            MVDAKPA S+QGTPLLATATLPVFTRGIYSTKRITLET         K LII TPAGKGTFN ILFLHGTSLSNKSYSKIFDHI SHGFIVVAP LY +IPPPSATNEL +
Sbjct:    4 MVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNS 114          

HSP 2 Score: 143.28 bits (360), Expect = 1.004e-80
Identity = 76/101 (75.25%), Postives = 78/101 (77.23%), Query Frame = 1
Query:  331 SASEVAEWLPQGLQQNLPENTEANVILVAVMGHNRGGQTAFALSLRYGFGAVIRLYPGAGTSKTTGXXXXXXXXXXXXXXXXGTEIGTGLDGVARCITACA 633
            SA+EVAEWLPQGLQQNLPENTEANV LVAVMGH+RGGQTAFALSLRYGFGAVI L P AGTSKTTG                 T IGTGL GVARCITACA
Sbjct:  114 SAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACA 214          
BLAST of CF838747 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.866e-79
Identity = 89/111 (80.18%), Postives = 93/111 (83.78%), Query Frame = 2
Query:    2 MVDAKPADSMQGTPLLATATLPVFTRGIYSTKRITLETXXXXXXXXXKALIITTPAGKGTFNDILFLHGTSLSNKSYSKIFDHIPSHGFIVVAPHLYNTIPPPSATNELTA 334
            MVD+KPA S+QGTPLLATATLPVFTRGIYSTKRITLET         K LII TPA KGTFN ILFLHGTSLSNKSYSKIFDHI SHGFIVVAP LY +IPPPSATNEL +
Sbjct:    4 MVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNS 114          

HSP 2 Score: 143.28 bits (360), Expect = 1.866e-79
Identity = 76/101 (75.25%), Postives = 78/101 (77.23%), Query Frame = 1
Query:  331 SASEVAEWLPQGLQQNLPENTEANVILVAVMGHNRGGQTAFALSLRYGFGAVIRLYPGAGTSKTTGXXXXXXXXXXXXXXXXGTEIGTGLDGVARCITACA 633
            SA+EVAEWLPQGLQQNLPENTEANV LVAVMGH+RGGQTAFALSLRYGFGAVI L P AGTSKTTG                 T IGTGL GVARCITACA
Sbjct:  114 SAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACA 214          
BLAST of CF838747 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.897e-17
Identity = 32/95 (33.68%), Postives = 48/95 (50.53%), Query Frame = 2
Query:   26 SMQGTPLLATATLPV-FTRGIYSTKRITLETXXXXXXXXXKALIITTPAGKGTFNDILFLHGTSLSNKSYSKIFDHIPSHGFIVVAPHLYNTIPP 307
            +++ +P  ++   P  F  G   T  I ++          K + IT P   GT+  +LF HG  L N  YS + +HI SHG+I+VAP L   +PP
Sbjct:    3 AIEDSPTFSSVVTPAAFEIGSLPTTEIPVDPVENDSTAPPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPP 97          

HSP 2 Score: 49.2914 bits (116), Expect = 2.897e-17
Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1
Query:  334 ASEVAEWLPQGLQQNLPENTEANVILVAVMGHNRGGQTAFALSLRYG--------FGAVIRLYPGAGTSK 519
            A  V  W  + L+ +LP +  AN    +++GH+RGG+TAFA++L +         F A+I + P AGT+K
Sbjct:  106 AGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAGTNK 175          
BLAST of CF838747 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.759e-17
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  149 LIITTPAGKGTFNDILFLHGTSLSNKSYSKIFDHIPSHGFIVVAPHLYNTIPP--PSATNEL 328
            LII +P   G +  +LF+HGT LSN+ YS  F++I SHGFIVVAP L+   PP  PS  +E+
Sbjct:   63 LIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEI 124          

HSP 2 Score: 43.5134 bits (101), Expect = 3.759e-17
Identity = 27/71 (38.03%), Postives = 40/71 (56.34%), Query Frame = 1
Query:  334 ASEVAEWLPQGLQ---QNLPENTEANVILVAVMGHNRGGQTAFALSLRYG-------FGAVIRLYPGAGTS 516
            A+ VA W+P  LQ   Q      E ++  +A+ GH+RGG++AFAL+L +        F A+I + P AG S
Sbjct:  127 AASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGFSNIKLDVTFSALIGVDPVAGRS 197          
BLAST of CF838747 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.501e-15
Identity = 23/55 (41.82%), Postives = 35/55 (63.64%), Query Frame = 2
Query:  143 KALIITTPAGKGTFNDILFLHGTSLSNKSYSKIFDHIPSHGFIVVAPHLYNTIPP 307
            K L++ TP  +G +  ++ LHG  L N  YS++  H+ SHGFI++AP LY+   P
Sbjct:   43 KQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGP 97          

HSP 2 Score: 47.7506 bits (112), Expect = 2.501e-15
Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 1
Query:  331 SASEVAEWLPQGLQQNLPENTEANVILVAVMGHNRGGQTAFALSL-RYGFGAVIRLYPGAGTSKTTG 528
            S +E+ +WL  GL   LP     N+   A+ GH+RGG+TAFA++L ++G+ + +++    G     G
Sbjct:  105 STAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSNLKISTLIGIDPVDG 171          
The following BLAST results are available for this feature:
BLAST of CF838747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITSI1.004e-8081.98Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_CITUN1.866e-7980.18Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_ARATH2.897e-1733.68Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH0_CHEAL3.759e-1751.61Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
CLH2_ARATH2.501e-1541.82Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06H16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838747 ID=CF838747; Name=CF838747; organism=Citrus sinensis; type=EST; length=635bp
AATGGTGGACGCCAAGCCTGCAGATTCAATGCAAGGCACTCCCCTTTTGG
CTACGGCCACACTTCCGGTATTTACTAGAGGAATTTATTCCACAAAACGC
ATCACGCTGGAGACATCATCTCCATCCTCACCACCTCCTCCAAAGGCATT
GATTATCACCACGCCAGCCGGAAAAGGAACTTTTAATGACATCTTGTTCC
TTCATGGCACTTCTCTCAGCAACAAAAGCTATTCGAAGATCTTTGACCAC
ATACCGTCCCATGGATTCATCGTTGTTGCTCCTCATCTATACAACACTAT
CCCGCCACCAAGTGCAACCAATGAACTTACAGCGCATCAGAAGTCGCGGA
GTGGCTACCCCAAGGCCTGCAGCAAAATCTCCCAGAAAATACTGAAGCGA
ACGTAATCTTGGTTGCTGTTATGGGGCACAATCGCGGAGGACAAACAGCT
TTTGCTCTATCACTACGCTATGGATTCGGAGCAGTAATACGGCTATACCC
CGGTGCTGGGACTAGTAAAACCACTGGACTTGATCCCTCGATTCTTTCTT
TCGACTCTTTCGACTTCTCGATTCCCGGTACTGAGATTGGCACCGGACTC
GACGGCGTGGCTAGGTGCATCACCGCTTGTGCACC
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