CF838759

Overview
NameCF838759
Unique NameCF838759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11694 contig Csv1_Contig11694:23..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838759 vs. ExPASy Swiss-Prot
Match: S14L1_HUMAN (SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 53/191 (27.75%), Postives = 91/191 (47.64%), Query Frame = 3
Query:  168 LKITFQNIHRGY--PTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREGLPVFAVGVRLTTFDKASV------HCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACW 710
            L+   Q  H+G     E ++RFL+ARD N+ KA +++   L WR Q+++D IL     P    + ++D    G   + ++G P++   +RL   D   +         ++  + +NE R R    +     GRPI++   ++D+ GL +  L +  +K L  I  V + NYPE      I+  P +F   W
Sbjct:  262 LRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILETWTPP----QVLQDYYAGGWHHHDKDGRPLYV--LRLGQMDTKGLVRALGEEALLRYVLSVNEERLRRCEENTKV-FGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLW 445          
BLAST of CF838759 vs. ExPASy Swiss-Prot
Match: S14L5_XENTR (SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 55/190 (28.95%), Postives = 87/190 (45.79%), Query Frame = 3
Query:  168 LKITFQNIHRGY--PTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREGLPVFAVGVRLTTFD-----KASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACW 710
            L+   Q  H+G     E ++RFL+ARD N+ KA +ML   L WR Q+++D IL     P    R + +    G   + ++G P++   +RL   D     KA     +  H+       +      + + GRPI +   ++D+ GL +  L +  +K L  I  V + NYPE      IV  P +F   W
Sbjct:  258 LRQWLQETHKGKIPKDEHILRFLRARDFNMEKAREMLCQSLSWRKQHQVDYILQTWQPP----RVLEEYYAGGWHYHDKDGRPLYI--LRLGQVDTKGLVKALGEEAILRHVLSINEEGQKRCEENTRQFGRPIWSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLIVRAPRVFPVLW 441          
The following BLAST results are available for this feature:
BLAST of CF838759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
S14L1_HUMAN1.744e-1127.75SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE... [more]
S14L5_XENTR5.076e-1128.95SEC14-like protein 5 OS=Xenopus tropicalis GN=sec1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06I05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838759 ID=CF838759; Name=CF838759; organism=Citrus sinensis; type=EST; length=710bp
GTGAATGTTAACTGTAATAAAGTAGAAAAGGGATTTCTTAAGCTAATAAT
ATCAATAAGTCTCAAAAGATTTTCCATTTTATTCTTCTGAGATCACAGGA
AATGGTTACCGATTCTCATGAAGCTGTCACTCAGTTCCAAGCTCTGATGG
ATCAAGTTGATGAGCCATTGAAGATTACATTTCAGAATATTCATCGAGGA
TATCCAACTGAAACTTTGGTTCGTTTTCTAAAAGCCAGAGATGGGAATGT
TTCCAAAGCTCATAAAATGTTGATGGATTGTTTGCACTGGAGGGCACAGA
ATGAGATTGACAAAATATTATCAAAACCCATAGTACCTACTGAATTGTAC
AGAGCCGTGCGTGATTCACAGCTCATAGGAATGTCAGGTTACTCAAGAGA
GGGTTTGCCAGTCTTTGCTGTTGGTGTAAGGCTCACTACGTTTGACAAAG
CATCTGTCCACTGCTATGTGCAATCACATATTCAAATAAATGAATATAGG
GATCGTGTCATTTTGCCTTCGGCATCAGCAAAGCATGGGCGACCAATAAC
CACATGTGTGAAGGTTTTAGATATGACTGGTCTGAAGCTTTCAGCATTAA
GCCAGATAAAGTTATTGACAATCATATCGACAGTTGATGACTTGAACTAC
CCGGAGAAGACAAATACATATTATATTGTGAATGTGCCATACATATTTTC
CGCATGTTGG
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