CF838760

Overview
NameCF838760
Unique NameCF838760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12552 contig Csv1_Contig12552:116..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L1_HUMAN (SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.864e-16
Identity = 65/228 (28.51%), Postives = 111/228 (48.68%), Query Frame = 3
Query:  168 LKITFQNIHRGY--PTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVG-------LSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGS---GRDELLKIMDFE 809
            L+   Q  H+G     E ++RFL+ARD N+ KA +++   L WR Q+++D IL     P    + ++D    G   + ++G P++ + +G       +    + ++  YV S   +NE R R    +     GRPI++   ++D+ GL +  L +  +K L  I  V + NYPE      I+  P +F   W +V P + + TR+K  +  G+   G   LL  +D E
Sbjct:  262 LRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILETWTPP----QVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLS---VNEERLRRCEENTKV-FGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKE 481          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: YN02_CAEEL (CRAL-TRIO domain-containing protein T23G5.2 OS=Caenorhabditis elegans GN=T23G5.2 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 8.607e-16
Identity = 65/234 (27.78%), Postives = 112/234 (47.86%), Query Frame = 3
Query:  120 EAVTQFQALMDQVDEP----LKITFQNIHRG-YPTET-LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQIN-----EYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRD 782
            E + +F   +  ++E     +K + Q  H+G  P +  L+RFL+ARD +V+KA  M+   + WR Q+ +DKIL +   PT + +              + G P++ +  G          C V++ +++      +   R     A+ K G PI++   V+D+ GL +  L +  ++ L  I  + + NYPE      +V  P +F   W ++ P + E+TRKK  V  GSG D
Sbjct:  242 EYIRRFLGQLSPLEESRLCEIKYSLQAHHKGKLPNDAHLLRFLRARDFDVAKAKDMVHASIIWRKQHNVDKILEEWTRPTVIKQYFPGC----WHNSDKAGRPMYILRFGQLDTKGMLRSCGVENLVKLTLSICEDGLQRAA--EATRKLGTPISSWSLVVDLDGLSMRHLWRPGVQCLLKIIEIVEANYPETMGQVLVVRAPRVFPVLWTLISPFIDEKTRKKFMVSGGSGGD 469          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: SEC14_ASHGO (SEC14 cytosolic factor OS=Ashbya gossypii GN=SEC14 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.918e-15
Identity = 60/208 (28.85%), Postives = 100/208 (48.08%), Query Frame = 3
Query:  213 TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILS------KPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQI-KLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            TL+RFL+AR  +V+ A  M  +C  WR +N +D I        KP+V     +    +   G   Y  E   V    +   T  +  +   +  +   + YR    LP++S +    + T   +LD+ G+ +SA +Q+   +   S +    YPE+   +Y++N P+ FSA +++ KP L   T  KI +L  S + ELLK +  E+L
Sbjct:   58 TLLRFLRARKFDVAAARAMFENCEKWRKENGVDTIFEDFHYEEKPLVAKFYPQYYHKTDKDGRPVYIEELGAVNLTEMYKITTQERMLKNLIWEYESFSRYR----LPASSRQADCLVETSCTILDLKGISISAAAQVLSYVREASNIGQNYYPERMGKFYMINAPFGFSAAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 261          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L5_XENTR (SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.918e-15
Identity = 59/209 (28.23%), Postives = 98/209 (46.89%), Query Frame = 3
Query:  168 LKITFQNIHRGY--PTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVG---LSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGS 773
            L+   Q  H+G     E ++RFL+ARD N+ KA +ML   L WR Q+++D IL     P    R + +    G   + ++G P++ + +G        KA     +  H+       +      + + GRPI +   ++D+ GL +  L +  +K L  I  V + NYPE      IV  P +F   W +V P + E +R+K  +  G+
Sbjct:  258 LRQWLQETHKGKIPKDEHILRFLRARDFNMEKAREMLCQSLSWRKQHQVDYILQTWQPP----RVLEEYYAGGWHYHDKDGRPLYILRLGQVDTKGLVKALGEEAILRHVLSINEEGQKRCEENTRQFGRPIWSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLIVRAPRVFPVLWTLVSPFINENSRQKFLIYSGN 462          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: SEC14_CANAL (SEC14 cytosolic factor OS=Candida albicans GN=SEC14 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 64/205 (31.22%), Postives = 101/205 (49.27%), Query Frame = 3
Query:  213 TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILS------KPIV----PTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKL-SALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLK 794
            +L+RFL+AR  ++ KA  M + C  WR    ++ IL       KPIV    PT  ++  +D + +    Y  E   V  V +   T  +  +   V  +  + +YR    LP+ S K G  + T   VLD++G+ + SA + I  +   S +    YPE+   +Y++N P+ FS  +K+ KP L   T  KI +L  S + ELLK
Sbjct:   57 SLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPIVAKMYPTYYHKTDKDGRPV----YFEELGKVDLVKMLKITTQERMLKNLVWEYEAMCQYR----LPACSRKAGYLVETSCTVLDLSGISVTSAYNVIGYVREASKIGQDYYPERMGKFYLINAPFGFSTAFKLFKPFLDPVTVSKIHILGYSYKKELLK 253          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: RETM_DROME (Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 66/243 (27.16%), Postives = 111/243 (45.68%), Query Frame = 3
Query:   78 FILLRSQEMVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKIL---SKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAV------------GVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IK-LLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKK 752
            FI     ++  +    + + + ++D VD+        + R    +T++RFL ARD +VS+A+ ML D L WR ++ ID +L   SKP V  E +         G     ++G PV+ +             +G+    + ++H   +   +INE  +R+          +P+     ++D+ GL +  L +  IK LL II TV + NYPE      +V  P +F   W +V   + E TR K
Sbjct:  209 FIARSLGQLSPMQESKLLELRKMLDGVDD--------LERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAVVVEHFPG-------GWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAERL---------EKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETV-ERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSK 426          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L5_HUMAN (SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.769e-14
Identity = 61/214 (28.50%), Postives = 102/214 (47.66%), Query Frame = 3
Query:  168 LKITFQNIHRGY--PTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSK---PIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGL----STFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IK-LLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGS 773
            L+   Q  H+G     E ++RFL+A D ++ KA +ML   L WR Q+++D +L     P +  E Y      Q I       +G P++ + +G                ++  + +NE   +     ++ + GRPI++   +LD+ GL +  L +  +K LL +I  V+D NYPE      IV  P +F   W ++ P + E TR+K  +  GS
Sbjct:  249 LRHWLQETHKGKIPKDEHILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLLLQTWQPPALLEEFYAGGWHYQDI-------DGRPLYILRLGQMDTKGLMKAVGEEALLRHVLSVNEEGQKRC-EGSTRQLGRPISSWTCLLDLEGLNMRHLWRPGVKALLRMIEVVED-NYPETLGRLLIVRAPRVFPVLWTLISPFINENTRRKFLIYSGS 453          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: SEC14_YEAST (SEC14 cytosolic factor OS=Saccharomyces cerevisiae GN=SEC14 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 60/208 (28.85%), Postives = 97/208 (46.63%), Query Frame = 3
Query:  213 TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILS------KPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLS-ALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            TL+RFL+AR  +V  A +M  +C  WR     D IL       KP++     +    +   G   Y  E   V    +   T ++  +   V  +  + +YR    LP+ S   G  + T   ++D+ G+ +S A S +  +   S +    YPE+   +YI+N P+ FS  +++ KP L   T  KI +L  S + ELLK +  E+L
Sbjct:   57 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYR----LPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 260          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L4_MOUSE (SEC14-like protein 4 OS=Mus musculus GN=Sec14l4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 63/212 (29.72%), Postives = 105/212 (49.53%), Query Frame = 3
Query:  216 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLI---GMAGYSREGLPVFAVGVGL----STFDKASVHCYVQSHIQINEYRDRVILPSA---SAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            L+R+L+AR+ ++ K+  ML   + +R Q  +D+IL+        ++A    QL    G++GY  EG PV+   +G       F  AS    ++  I++ E    ++L      S K GR I   V V DM GL L  L +  +++      + + NYPE      I+  P +F   + +VK  + E T+KKI +L G+ + EL+K +  + L
Sbjct:   38 LLRWLRARNFDLKKSEDMLRKHVEFRNQQNLDQILT--------WQAPEVIQLYDSGGLSGYDYEGCPVWFDIIGTMDPKGLFMSASKQDMIRKRIKVCE----MLLHECELQSQKLGRKIERMVMVFDMEGLSLRHLWKPAVEVYQQFFAILEANYPETVKNLIIIRAPKLFPVAFNLVKSFMGEETQKKIVILGGNWKQELVKFVSPDQL 237          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L2_RAT (SEC14-like protein 2 OS=Rattus norvegicus GN=Sec14l2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 60/199 (30.15%), Postives = 97/199 (48.74%), Query Frame = 3
Query:  216 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVIL----PSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLK 794
            L+R+L+AR  ++ K+  ML   + +R Q +IDKI+S    P E+ +        G  GY  +G PV+   +G     K  +    +  +   + RD  +L       +AK G+ I T   + D  GL L  L +  ++      T+ + NYPE     ++V  P +F   + ++KP L E TRKKI VL  + ++ LLK
Sbjct:   38 LLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDKIISWQ--PPEVIQQYLSG---GRCGYDLDGCPVWYDIIG-PLDAKGLLFSASKQDLLRTKMRDCELLLQECTQQTAKLGKKIETITMIYDCEGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLK 230          
The following BLAST results are available for this feature:
BLAST of CF838760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
S14L1_HUMAN3.864e-1628.51SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE... [more]
YN02_CAEEL8.607e-1627.78CRAL-TRIO domain-containing protein T23G5.2 OS=Cae... [more]
SEC14_ASHGO1.918e-1528.85SEC14 cytosolic factor OS=Ashbya gossypii GN=SEC14... [more]
S14L5_XENTR1.918e-1528.23SEC14-like protein 5 OS=Xenopus tropicalis GN=sec1... [more]
SEC14_CANAL1.623e-1431.22SEC14 cytosolic factor OS=Candida albicans GN=SEC1... [more]
RETM_DROME1.623e-1427.16Protein real-time OS=Drosophila melanogaster GN=re... [more]
S14L5_HUMAN2.769e-1428.50SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE... [more]
SEC14_YEAST3.616e-1428.85SEC14 cytosolic factor OS=Saccharomyces cerevisiae... [more]
S14L4_MOUSE3.616e-1429.72SEC14-like protein 4 OS=Mus musculus GN=Sec14l4 PE... [more]
S14L2_RAT1.052e-1330.15SEC14-like protein 2 OS=Rattus norvegicus GN=Sec14... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06I06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838760 ID=CF838760; Name=CF838760; organism=Citrus sinensis; type=EST; length=815bp
GTGAATGTTAACTGTAATAGAGTAGAAAAGGGATTTCTTAAGCTAATAAT
ATTAATAAGTCTCAAAAGATTTTCCATTTTATTCTTCTGAGATCACAGGA
AATGGTTACCGTTTCTCATGAAGCTGTCACTCAGTTCCAAGCTCTGATGG
ATCAAGTTGATGAGCCATTGAAGATTACATTTCAGAATATTCATCGAGGA
TATCCAACTGAAACTTTGGTTCGTTTTCTAAAAGCCAGAGATGGGAATGT
TTCCAAAGCTCATAAAATGTTGATGGATTGTTTGCACTGGAGGGCACAGA
ATGAGATTGACAAAATATTATCAAAACCCATAGTACCTACTGAATTGTAC
AGAGCCGTGCGTGATTCACAGCTCATAGGAATGGCAGGTTACTCAAGAGA
GGGTTTGCCAGTCTTTGCTGTTGGTGTAGGGCTCAGTACGTTTGACAAAG
CATCTGTCCACTGCTATGTGCAATCACATATTCAAATAAATGAATATAGG
GATCGTGTCATTTTGCCTTCGGCATCAGCAAAGCATGGGCGACCAATAAC
CACATGTGTGAAGGTTTTAGATATGACTGGTCTGAAGCTTTCAGCATTAA
GCCAGATAAAGTTATTGACAATCATATCGACAGTTGATGACTTGAACTAC
CCAGAGAAGACAAATACATATTATATTGTGAATGTGCCATACATATTTTC
CGCATGTTGGAAGGTCGTTAAGCCCCTTCTGCAGGAGAGGACAAGGAAAA
AGATTCAGGTCTTGCAAGGTTCTGGGCGAGATGAGCTATTGAAGATCATG
GATTTTGAATCACTT
back to top