CF838763

Overview
NameCF838763
Unique NameCF838763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_ARATH (Acyl carrier protein, mitochondrial OS=Arabidopsis thaliana GN=At2g44620 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 MAAR*GALLKYLRVNVATVQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 378
            MA R  A+L++LRV V T+  N S   + F    R F+       L +  V DRV+ VVK+F KVDPSKVT   HFQNDLGLDSLDTVE+VMA+EEEF  EIPD EADKI++ ++A++++ +HP +
Sbjct:    1 MALR-NAILRHLRVPVQTLGLNQS--KIGFLGTIRSFSSH--DDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVYNHPMS 121          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1
Query:  127 GSFLDKSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 378
            G  L K EV  R+  V+  F KV DP  +T  AHF NDLGLDSLDTVEVVMA+EEEF  EIPD +AD+I++++ AV++I S P A
Sbjct:   49 GGHLKKDEVFSRIAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSVDKAVEYILSQPDA 133          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_PONPY (Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  151 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 363
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_PANTR (Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  151 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 363
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_MOUSE (Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  151 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 363
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_HUMAN (Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  151 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 363
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_GORGO (Acyl carrier protein, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  151 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 363
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_BOVIN (Acyl carrier protein, mitochondrial OS=Bos taurus GN=NDUFAB1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  151 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 363
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACPM_SCHPO (Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC4H3.09 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  142 KSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQAK 381
            + +   R++ VV +F K+ DP KVT  + F NDLGLDSLD VEVVMA+EEEF  +IPD +AD+I ++  A+ +I  +P+AK
Sbjct:   32 RPDAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEITSVGDAISYITKNPEAK 112          
BLAST of CF838763 vs. ExPASy Swiss-Prot
Match: ACP_LEUMU (Acyl carrier protein OS=Leucothrix mucor GN=acpP PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  145 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 369
            S++  RV +VV     VD ++VT  A F +DLG DSLDTVE+VMALEEEFG EIPD EA+KI T+ +A+D++ SH
Sbjct:    2 SDIEQRVKNVVVEQLGVDEAEVTNAASFVDDLGADSLDTVELVMALEEEFGTEIPDEEAEKITTVQLAIDYVKSH 76          
The following BLAST results are available for this feature:
BLAST of CF838763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ACPM_ARATH4.723e-2752.38Acyl carrier protein, mitochondrial OS=Arabidopsis... [more]
ACPM_NEUCR1.922e-2057.65Acyl carrier protein, mitochondrial OS=Neurospora ... [more]
ACPM_PONPY1.523e-1756.34Acyl carrier protein, mitochondrial OS=Pongo pygma... [more]
ACPM_PANTR1.523e-1756.34Acyl carrier protein, mitochondrial OS=Pan troglod... [more]
ACPM_MOUSE1.523e-1756.34Acyl carrier protein, mitochondrial OS=Mus musculu... [more]
ACPM_HUMAN1.523e-1756.34Acyl carrier protein, mitochondrial OS=Homo sapien... [more]
ACPM_GORGO1.523e-1756.34Acyl carrier protein, mitochondrial OS=Gorilla gor... [more]
ACPM_BOVIN1.523e-1756.34Acyl carrier protein, mitochondrial OS=Bos taurus ... [more]
ACPM_SCHPO5.787e-1750.62Putative acyl carrier protein, mitochondrial OS=Sc... [more]
ACP_LEUMU2.199e-1657.33Acyl carrier protein OS=Leucothrix mucor GN=acpP P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838763 ID=CF838763; Name=CF838763; organism=Citrus sinensis; type=EST; length=686bp
ATGGCGGCGCGCTGAGGTGCCTTGCTAAAGTACCTGAGAGTGAACGTGGC
CACCGTGCAACGAAACCCTAGCCCCTTTTCTCTCTCATTCAACTCCATAC
GCCGCTGTTTCGCGGAAGAGGTCAGGGGCTCTTTCCTCGACAAATCTGAA
GTCACCGATCGCGTCATTTCCGTCGTTAAAAACTTCCAGAAAGTTGATCC
TTCCAAGGTTACGGTTAATGCCCATTTCCAGAATGATCTTGGGTTGGATA
GTTTGGACACTGTGGAGGTCGTGATGGCACTTGAAGAAGAATTCGGATTC
GAGATCCCAGATAATGAGGCAGACAAGATCAATACCATCAATATGGCTGT
CGATTTCATTGCTTCTCATCCTCAGGCTAAGTAGGGGAAACTATGAAGCC
CTACGATGCTATTTTCACTCTTTTGATGTTCAGAATTAGCAGCAGCATTA
GAATTCTCTTATCCCGGTACCTAAAATTTTTGTTCCTTAAAAAACGAGTA
AACTTTAAAAGCCTTTCTGGTTTTCCGACCCCATTTGAACTCTGCTTGAA
GAGTATTGTTTTTGGGAGACTTGCCGCGTCGAAAATGCTTTCCATTAAAT
TGGAAGATTGGAATGGTCTGGTATTTCTTCACTACTCATCATATATGTTC
TTTCATTTTAATAAAGATCATGTAGGAGACAAAAAA
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