CF838765

Overview
NameCF838765
Unique NameCF838765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838765_ssr55 microsatellite CF838765_ssr55:55..80. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838765_ssr105 microsatellite CF838765_ssr105:105..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11725 contig Csv1_Contig11725:2..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: SMT2_ARATH (24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2)

HSP 1 Score: 430.254 bits (1105), Expect = 6.600e-120
Identity = 202/232 (87.07%), Postives = 221/232 (95.26%), Query Frame = 2
Query:  137 MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            MDSL LF TGAL+A G+YWF+CVLGPAE+KGKRAV+LSGGSISAE+V+DNYK+YW FF+RPKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH+DATRLHEEMAVDLI VK G +ILDVGCGVGGPMRAIA+HSRANVVGITINEYQVNRARLHNKKAGLD+LCEVVCGNFL+MPF+DN FDGAYSIEATCHAPKLE+VYAE++RVLKPGS+YVSYEWVTT
Sbjct:    1 MDSLTLFFTGALVAVGIYWFLCVLGPAERKGKRAVDLSGGSISAEKVQDNYKQYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHKDATRLHEEMAVDLIQVKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDALCEVVCGNFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTT 232          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: SMT3B_ARATH (24-methylenesterol C-methyltransferase 3 OS=Arabidopsis thaliana GN=SMT3 PE=2 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.333e-112
Identity = 186/232 (80.17%), Postives = 212/232 (91.38%), Query Frame = 2
Query:  137 MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            MDS+AL+CT  L+AG +YWF+CVLGPAE+KGKRA +LSGGSISAE+V+DNY +YW FF++PKE  + EKVPDFVDTFYNLVTDIYEWGWGQSFHFSP +PGKS +DATR+HEEMAVDLI VK G +ILD GCGVGGPMRAIAAHS+A V GITINEYQV RA+LHNKKAGLDSLC VVCGNFLKMPF++N FDGAYSIEATCHAPKLE+VY+E+FRV+KPGSL+VSYEWVTT
Sbjct:    1 MDSVALYCTAGLIAGAVYWFICVLGPAERKGKRASDLSGGSISAEKVKDNYNQYWSFFRKPKEIESAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPHVPGKSDKDATRIHEEMAVDLIKVKPGQKILDAGCGVGGPMRAIAAHSKAQVTGITINEYQVQRAKLHNKKAGLDSLCNVVCGNFLKMPFDENTFDGAYSIEATCHAPKLEEVYSEIFRVMKPGSLFVSYEWVTT 232          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: SMT2_ORYSJ (24-methylenesterol C-methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Smt2-1 PE=2 SV=2)

HSP 1 Score: 358.607 bits (919), Expect = 2.440e-98
Identity = 168/220 (76.36%), Postives = 188/220 (85.45%), Query Frame = 2
Query:  185 LYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-----TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            +YWFV V+G AE KGKRAV+L  GSI+ ++V+D Y +YW FF+RPKET     + EKVP FVDTFYNLVTDIYEWGWGQSFHFSPS+PG+SHR+ATR+HEE   DL+  K G R+LDVGCGVGGPMRAIAAHS +NVVGITINEYQVNRAR HN+KAGLDS CEVVCGNFL MPF D  FDGAYSIEATCHAP+L+DVY EVFRVLKPG LYVSYEWVTT
Sbjct:   18 VYWFVWVMGAAEVKGKRAVDLKMGSITNDKVKDKYTQYWSFFRRPKETATTEASAEKVPAFVDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLKPGGLYVSYEWVTT 237          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.344e-47
Identity = 88/196 (44.90%), Postives = 124/196 (63.27%), Query Frame = 2
Query:  251 GGSISAEEVE---DNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            GG I+ +EV+   D Y++Y  ++   +E  K    D V+ +Y+L T  YE+GWG+SFHF+    G+S R++ + HE      + VK G ++LDVGCG+GGP+R IA  S A+V G+  NEYQ+ R +  N+ AG+   C+ V  +F+KMPF DN FD  Y+IEATCHAP     Y E++RVLKPG  +  YEW  T
Sbjct:   14 GGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEWCIT 209          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.397e-45
Identity = 84/196 (42.86%), Postives = 120/196 (61.22%), Query Frame = 2
Query:  251 GGSISAEEV---EDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            GG I   +V    + Y++Y  F    +E  K    D V+ +Y+L T  YE+GWG+SFHF+    G+S R++ + HE      + ++ G ++LDVGCG+GGP+R IA  S + V G+  NEYQ+ R +  N+ AG+D  C  V  +F+KMPF +N FD  Y+IEATCHAP     Y E++RVLKPG  + +YEW  T
Sbjct:    8 GGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCMT 203          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: ERG6_CANGA (Sterol 24-C-methyltransferase OS=Candida glabrata GN=ERG6 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.088e-45
Identity = 89/208 (42.79%), Postives = 124/208 (59.62%), Query Frame = 2
Query:  215 AEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVD---TFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            AE +      LS    +  E    Y  +W   K  KE    ++ D+ +   ++YN+VTD YE+GWG SFHFS    G++ + A   HE+    +  +K GD +LDVGCGVGGP R IA  +  N++G+  N+YQ+ +A+ + KK  L    + V G+F+ M FE N FD  Y+IEATCHAPKLE VY E+++VLKPG  +  YEWV T
Sbjct:   22 AESRTGLTALLSKNRNAQREAVSKYLRHWDG-KTDKEAEDRRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGENFQAAMARHEQYLAYMAGIKKGDLVLDVGCGVGGPARTIARFTGCNIIGLNNNDYQIQKAKYYAKKYNLQDHMDFVKGDFMNMEFEPNSFDKVYAIEATCHAPKLEGVYGEIYKVLKPGGTFAVYEWVMT 228          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: ERG6_MAGGR (Sterol 24-C-methyltransferase OS=Magnaporthe grisea GN=ERG6 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 9.108e-45
Identity = 93/191 (48.69%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  281 DNYKEYWKFFKRPKETTK---EKVPDFVDT---FYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS--LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            D Y  +W       ETTK   E+  D+      +YNLVTD YE+GWGQSFHF    PG++   A   +E      I +K G ++LD+GCGVGGP R IA  + AN+ GITINEYQV RAR + +  G  +    + V G+F+ +PFE   FD  YSIEAT HAPKLEDVY ++F VLKPG ++  YEWV T
Sbjct:   55 DQYFRHWDGKTAKTETTKVREERKADYATLTRQYYNLVTDFYEYGWGQSFHFCTFAPGETFASAITRYEHTLAHRIGIKKGMKVLDIGCGVGGPARQIAKFTGANITGITINEYQVERARRYAEMEGYGAGEQLKFVQGDFMALPFEKETFDAVYSIEATVHAPKLEDVYKQIFNVLKPGGIFGLYEWVMT 245          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: SMT1_DICDI (Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.650e-44
Identity = 86/191 (45.03%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  269 EEVEDNYKEYWKFFK----RPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            ++V+D    Y + FK    +  +  K      V+TFY+L TD YE+GWGQSFHF+     +S   +   HE      + +  G +++D+GCGVGGPMR IA  S ANVVG+  NEYQ+ R +  N+ AGL  LC  +  +F+ +P EDN +D AY IEATCHAP L  +Y EVFR++KPG L+  YEW+ T
Sbjct:   30 DKVDDTLNGYKELFKGNDDKAIQARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFMHVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYEWIMT 220          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: ERG6_YEAST (Sterol 24-C-methyltransferase OS=Saccharomyces cerevisiae GN=ERG6 PE=1 SV=4)

HSP 1 Score: 177.178 bits (448), Expect = 1.007e-43
Identity = 86/197 (43.65%), Postives = 120/197 (60.91%), Query Frame = 2
Query:  245 LSGGSISAEEVEDNYKEYW--KFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 829
            +S  + + +E    Y   W  +  K  +E   E   +   ++YN+VTD YE+GWG SFHFS    G+S   +   HE        ++ GD +LDVGCGVGGP R IA  +  NV+G+  N+YQ+ +A+ + KK  L    + V G+F+KM FE+N FD  Y+IEATCHAPKLE VY+E+++VLKPG  +  YEWV T
Sbjct:   32 MSKNNSAQKEAVQKYLRNWDGRTDKDAEERRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQRGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDFMKMDFEENTFDKVYAIEATCHAPKLEGVYSEIYKVLKPGGTFAVYEWVMT 228          
BLAST of CF838765 vs. ExPASy Swiss-Prot
Match: ERG6_SCHPO (Sterol 24-C-methyltransferase OS=Schizosaccharomyces pombe GN=SPBC16E9.05 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.525e-43
Identity = 90/211 (42.65%), Postives = 128/211 (60.66%), Query Frame = 2
Query:  227 GKRAVNLSG-GSISAEEVEDNYK---EYWKFFKRPKETTKEK--------VPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 823
            GK A   +G  +I++++V++  +   EY++F+ R  E   E+            V+++Y+L TD+YE+GW QSFHFS    G++   +   HE      + +K G R+LDVGCGVGGP R I   +  N+VG+  N+YQ++R   +  K  LD     V G+F+ MPFEDN FD  Y+IEAT HAP LE VY E+FRVLKPG ++  YEWV
Sbjct:   21 GKAAEKKTGLAAIASKDVDEQSRKLQEYFEFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYGEIFRVLKPGGVFGVYEWV 231          
The following BLAST results are available for this feature:
BLAST of CF838765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SMT2_ARATH6.600e-12087.0724-methylenesterol C-methyltransferase 2 OS=Arabid... [more]
SMT3B_ARATH1.333e-11280.1724-methylenesterol C-methyltransferase 3 OS=Arabid... [more]
SMT2_ORYSJ2.440e-9876.3624-methylenesterol C-methyltransferase 2 OS=Oryza ... [more]
SMT1_ORYSJ3.344e-4744.90Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
SMT1_ARATH2.397e-4542.86Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
ERG6_CANGA4.088e-4542.79Sterol 24-C-methyltransferase OS=Candida glabrata ... [more]
ERG6_MAGGR9.108e-4548.69Sterol 24-C-methyltransferase OS=Magnaporthe grise... [more]
SMT1_DICDI2.650e-4445.03Probable cycloartenol-C-24-methyltransferase 1 OS=... [more]
ERG6_YEAST1.007e-4343.65Sterol 24-C-methyltransferase OS=Saccharomyces cer... [more]
ERG6_SCHPO8.525e-4342.65Sterol 24-C-methyltransferase OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838765 ID=CF838765; Name=CF838765; organism=Citrus sinensis; type=EST; length=831bp
CGGCGTCTCATAATAGTGGAGCCGCCCGAGTCCGCCTTTGCTTTAACCCT
CTCTCACACACACACACACACACACACACAACACAGTCACGCTCTCGCAC
TCCATCTCTCTCTCCTTCTAACTTTTTCAAGTCTCAATGGATTCTCTCGC
TCTCTTTTGCACCGGCGCTCTCCTTGCCGGTGGCCTCTACTGGTTTGTCT
GCGTACTCGGCCCCGCCGAACAAAAGGGCAAGCGCGCCGTCAACCTCTCC
GGCGGCTCGATCTCCGCCGAGGAAGTCGAAGACAATTATAAAGAGTACTG
GAAGTTCTTTAAACGCCCGAAGGAGACAACCAAGGAGAAGGTTCCAGATT
TCGTCGACACGTTTTACAACTTAGTCACAGACATTTACGAGTGGGGGTGG
GGCCAGTCCTTCCACTTCTCCCCCTCTATCCCCGGGAAATCCCACCGTGA
CGCCACGCGCCTCCACGAGGAGATGGCCGTCGATCTCATTGACGTCAAGG
CCGGAGACCGCATTCTCGACGTCGGATGCGGGGTCGGCGGTCCCATGCGT
GCCATCGCCGCCCACTCGCGTGCCAATGTCGTCGGCATCACAATCAACGA
GTATCAAGTGAATCGTGCTCGTCTGCACAACAAGAAGGCGGGATTAGATT
CTCTCTGCGAAGTAGTATGCGGAAACTTCCTAAAGATGCCGTTTGAAGAC
AACCACTTCGACGGCGCGTACTCAATCGAAGCGACATGTCACGCGCCGAA
GCTGGAGGACGTGTACGCTGAGGTCTTTAGGGTTTTGAAGCCCGGATCTC
TATACGTGTCGTACGAGTGGGTCACGACAGA
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