CF838766

Overview
NameCF838766
Unique NameCF838766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:583..1341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838766 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    1 SGGNVLHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 405
            SGGN++H VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  190 SGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CF838766 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.716e-15
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    1 SGGNVLHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 405
            SGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  192 SGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CF838766 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 1
Query:    1 SGGNVLHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELL 372
            SGGN+ H VA RA +  +   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL
Sbjct:  192 SGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312          
BLAST of CF838766 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 44/135 (32.59%), Postives = 68/135 (50.37%), Query Frame = 1
Query:    1 SGGNVLHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 405
            SGGN+ H VA RA D  +   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP    + GL     L+ V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  199 SGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
The following BLAST results are available for this feature:
BLAST of CF838766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH1.552e-1638.52Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.716e-1536.30Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH4.992e-1537.10Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ3.349e-1132.59Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06I18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838766 ID=CF838766; Name=CF838766; organism=Citrus sinensis; type=EST; length=759bp
TCCGGAGGGAACGTATTGCATGAAGTGGCGGCACGTGCAGGTGACGCGGA
CTTGAGCCCGTTGCGTGTGGCCGGAGCGATTCCGATTCATCCGGGTTTCC
TCCGGCAGGAAAGGAGCAAGTCGGAGTTGGAAAACCCGCAGTCACCTCTT
CTGACTCTGGACATGGTGGACAAGTTCTTGAGCTTTGCCCTGCCGTTGAA
CAGCGACAAGGGGCATCCGTACACCTGTCCAATGGGGCCGGCTGCGTCGC
CGATCGACGGTCTGAAGCTGCCTCCGTTTCTGCTGTGCGTGGCGGGTAAT
GACTTGATTAAGGACACTGAGATGGAATATTATGAAGCCATGAAAAAGGC
TGGAAAGGATGTGGAGTTGTTGGTGAATCCTGGAATGGGTCACAGTTTTT
ATCTCGACAAGATTGCAGTCGATATGGACCCAAACACTGCTGCTCAAACT
TGTAGTCTTTTTCAAGGAATAGCGGAGTTTATGAGGAAGCACTGATCAAT
TATCAATTTTTTAATCCATAAATAGTTGATTATCCGATTAATGGTGGGGT
TTTTCTTAAGTTACATTTGTCGTAACTTAACAACCCAATTAAAATATACA
AAAATAAGTAACATTGCAAGCGTGTGATTTTTACATTGTTTTAGTTGTGC
TCCAAGTTATTACAATAAATGGAACTTAACAAAACCCTAATGGTGGATGG
ATGTGGTCCTGTATGACTTGGCAATGTTGTTTTAATAGTAGTTTAGTGTA
GTTGTGCTC
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