CF838785

Overview
NameCF838785
Unique NameCF838785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5424 contig Csv1_Contig5424:55..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.706e-26
Identity = 69/166 (41.57%), Postives = 95/166 (57.23%), Query Frame = 3
Query:   36 MTSALLMSLDDIIKSNKXXXXXXXXXXXXXXXXXPARHTFKRSVNRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGP 533
            M   + MSLDDIIK N+                  AR       NR APYS+P   P   W  ++  +G           +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +V +DRSGRS GTA+V   RRADA+ A+K+Y  V LDG+PM I+++ + I P
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDK-WQHDLFDSGCGG-----GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDP 156          
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.229e-26
Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 3
Query:  168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAIPIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPNLSVEDLDADLEKYH 770
            NR APYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I   A   PI +   G  I   R     GGAI                                 K  LS E+LDA L+ Y+
Sbjct:   75 NRPAPYSRPKQLPDK-WQHDLFDSGFGT-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI--EAQRRPIQSQSRGGGITRPR-----GGAIGFS--------GANRRGGRGGNRGRGRGAGRNPKQQLSAEELDAQLDAYN 254          
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.911e-26
Identity = 74/201 (36.82%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAIPIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPNLSVEDLDADLEKYH 770
            NR APYS+P Q P+  W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I       P  +V   N  G +R+   +GG                                  +K  LS E+LDA L+ Y+
Sbjct:   69 NRPAPYSRPKQLPEK-WQHDLFDSGFGA-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR--PAQSV---NRGGMTRNRGVLGG----------FGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEELDAQLDAYN 248          
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 527
            NR APYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   71 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 184          
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 527
            NR APYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   72 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 527
            NR APYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   72 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 3
Query:  168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 527
            NR  PYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   72 NRPTPYSRPKQLPDK-WQHDLFDSGFGA-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.203e-25
Identity = 74/201 (36.82%), Postives = 105/201 (52.24%), Query Frame = 3
Query:  168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAIPIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPNLSVEDLDADLEKYH 770
            NR  PYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+ M I+++ + I   A   PI +   G  +   R     GGAI                                 K  LS E+LDA L+ Y+
Sbjct:   71 NRPTPYSRPKQLPDK-WQHDLFDSGFGT-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI--EAQRRPIQSQSRGGGVARPR-----GGAI--------GFAAGGNRRDRGANRGRGRGAGRNPKQQLSAEELDAQLDAYN 250          
The following BLAST results are available for this feature:
BLAST of CF838785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
REFP2_MOUSE1.706e-2641.57RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_XENTR2.229e-2638.31THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THOC4_TAEGU2.911e-2636.82THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_MOUSE6.485e-2648.33THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_HUMAN6.485e-2648.33THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_BOVIN6.485e-2648.33THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THO4A_XENLA3.218e-2547.50THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA4.203e-2536.82THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06J14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838785 ID=CF838785; Name=CF838785; organism=Citrus sinensis; type=EST; length=780bp
CGCAACCTTTCAGTTACATTTGGGTTTCTTCAAGGATGACTAGCGCCTTG
CTTATGTCTCTCGATGATATCATCAAATCCAACAAGAGGTCCAGTTCTCG
CTGGCGCGGCGGAGGCGGCAGAGGTTCGGGCCTAGGCCCCGCCCGTCACA
CCTTCAAGCGCAGCGTCAACAGAACGGCGCCCTATTCCAAGCCGGTTCAA
GCTCCGCAAGCCACGTGGCCACAGAACATGATCTTCAACGGTGCTGTTGC
AGCTGCTGCGGCTCGATCTTCATCGATAGAGAGTGGCACCAAACTTTATA
TTTCAAACTTGGAATACGGTGTTTCTAATGAAGACATCAAGGAGCTTTTT
TCAGAGGTTGGTGAACTTAAACGGTGTTCTGTTCATTTTGATAGGAGTGG
AAGATCAAAGGGAACTGCAGAAGTTGTCTTAACACGACGAGCTGATGCTA
TAGCAGCTGTAAAGAGATACAATAATGTCCAGCTAGATGGAAAACCAATG
AAAATTGAGATAATTGGAACAAATATTGGACCTCCAGCTGCTGTGCTTCC
AATTACAAATGTCATGTATGGAAACGAAATTGGCACTTCAAGAAGTCACC
TAAGAATGGGAGGTGCCATTCCCATTGAAAGGCCTCGCCATGGCCGTGGT
GGCCTCGGTGGCCGTGGAGGCAGGGGAGGTGCCAGGGGGGGTCGTGGAAG
AGGTAGAGGTCAAGGTGCAAAGCCAAACCTTTCTGTAGAAGATCTTGATG
CAGATTTGGAGAAATACCATATAGAAGCAA
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