CF838785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.706e-26 Identity = 69/166 (41.57%), Postives = 95/166 (57.23%), Query Frame = 3 Query: 36 MTSALLMSLDDIIKSNKXXXXXXXXXXXXXXXXXPARHTFKRSVNRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGP 533 M + MSLDDIIK N+ AR NR APYS+P P W ++ +G +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +V +DRSGRS GTA+V RRADA+ A+K+Y V LDG+PM I+++ + I P Sbjct: 1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDK-WQHDLFDSGCGG-----GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDP 156
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.229e-26 Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 3 Query: 168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAIPIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPNLSVEDLDADLEKYH 770 NR APYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I A PI + G I R GGAI K LS E+LDA L+ Y+ Sbjct: 75 NRPAPYSRPKQLPDK-WQHDLFDSGFGT-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI--EAQRRPIQSQSRGGGITRPR-----GGAIGFS--------GANRRGGRGGNRGRGRGAGRNPKQQLSAEELDAQLDAYN 254
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.911e-26 Identity = 74/201 (36.82%), Postives = 109/201 (54.23%), Query Frame = 3 Query: 168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAIPIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPNLSVEDLDADLEKYH 770 NR APYS+P Q P+ W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I P +V N G +R+ +GG +K LS E+LDA L+ Y+ Sbjct: 69 NRPAPYSRPKQLPEK-WQHDLFDSGFGA-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR--PAQSV---NRGGMTRNRGVLGG----------FGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEELDAQLDAYN 248
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26 Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 3 Query: 168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 527 NR APYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 71 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 184
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26 Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 3 Query: 168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 527 NR APYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 72 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26 Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 3 Query: 168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 527 NR APYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 72 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25 Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 3 Query: 168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 527 NR PYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 72 NRPTPYSRPKQLPDK-WQHDLFDSGFGA-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185
BLAST of CF838785 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.203e-25 Identity = 74/201 (36.82%), Postives = 105/201 (52.24%), Query Frame = 3 Query: 168 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAIPIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPNLSVEDLDADLEKYH 770 NR PYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+ M I+++ + I A PI + G + R GGAI K LS E+LDA L+ Y+ Sbjct: 71 NRPTPYSRPKQLPDK-WQHDLFDSGFGT-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI--EAQRRPIQSQSRGGGVARPR-----GGAI--------GFAAGGNRRDRGANRGRGRGAGRNPKQQLSAEELDAQLDAYN 250 The following BLAST results are available for this feature:
BLAST of CF838785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF838785 ID=CF838785; Name=CF838785; organism=Citrus sinensis; type=EST; length=780bpback to top |