CF838787

Overview
NameCF838787
Unique NameCF838787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:364..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.841e-32
Identity = 65/88 (73.86%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K+HG PEDD RHA            TATFT++D+QIPLSGPNSI+GRAVVVHA+PDDLG+GGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   65 PNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.328e-32
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K+HG PED+ RHA            TATFT++D+QIPL+GPNSI+GRAVVVHADPDDLG+GGHELSK TGNAGGRVACG+IGLQG
Sbjct:   65 PAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.405e-31
Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K+HG PED+NRHA            TA+FT+ D QIPL+GP SIIGR VVVHADPDDLGKGGHEL+KTTGNAGGRVACGIIGLQG
Sbjct:   65 PAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K HG PED NRHA            TATFT+ D+QIPLSGPNSI+GRA+VVHADPDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:   65 PDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.997e-31
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K+HG PED+ RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   65 PAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.997e-31
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K+HG PEDD RHA              +F+++D+QIPL+GPNSI+GRAVVVHADPDDLGKGGHELSKTTGNAGGRVACG+IGLQG
Sbjct:   65 PAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 9.138e-31
Identity = 64/88 (72.73%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K HG PED NRHA            TATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:   65 PEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30
Identity = 64/88 (72.73%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K+HG PED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   65 PAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30
Identity = 64/88 (72.73%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K+HG PED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   65 PAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.559e-30
Identity = 63/88 (71.59%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 279
            P  K+HG PED+ RHA            T +FT+ DN IPL+G NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   65 PNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
The following BLAST results are available for this feature:
BLAST of CF838787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SODC_SPIOL2.841e-3273.86Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC1_MESCR6.328e-3270.45Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_CAPAN2.405e-3171.59Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC_BRAOC3.141e-3172.73Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_NICPL6.997e-3172.73Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_CARPA6.997e-3169.32Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC1_BRAJU9.138e-3172.73Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC1_ORYSJ1.193e-3072.73Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI1.193e-3072.73Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_PEA1.559e-3071.59Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838787 ID=CF838787; Name=CF838787; organism=Citrus sinensis; type=EST; length=429bp
CCGGACCCCACCTTTCCCTGCTGGAAAAAACATGGACCTCCAGAGGATGA
CAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTA
CTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAAT
TCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGG
CAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAG
TAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGAC
AATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATA
TGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTAA
AACTTTGTTGTGTAAAAAAAAAAAAAAAA
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