CF838790

Overview
NameCF838790
Unique NameCF838790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:413..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 170
            FF+CTAKTEWL GKHVVFGQVVEGMDVVKAIEKVGSSSGRT K VV+ DCGQLS
Sbjct:  119 FFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.662e-21
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 170
            FF+CT KT+WL GKHVVFGQVVEG+DVVKAIEKVGSSSG+  KPVV+ADCGQLS
Sbjct:  119 FFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.671e-20
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 170
            FF+CT KT+WL GKHVVFGQVVEG+DVVKAIEK+GSSSG+  KPVVIADCG++S
Sbjct:  120 FFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CTAKTEWL GKHVVFGQVVEGMDV+K  E VGSSSGR +KPVVIADCGQL
Sbjct:  119 FFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 170
            FF+CT KT WL GKHVVFGQVVEGMDVV+AIEKVGS SG+T KPV IADCGQLS
Sbjct:   97 FFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.380e-19
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 170
            FF+CT KT WL GKHVVFGQVVEG++VV+ IEKVGS SGRT+KPVVIADCGQ+S
Sbjct:  120 FFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.043e-19
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 170
            FF+CT KTEWL GKHVVFG+V+EGM+VV+ IEKVGS SG+T++PV IADCGQLS
Sbjct:  119 FFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.631e-18
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 170
            FF+CT KT WL GKHVVFGQVV+G+DVVKAIEKVGS SG+T+K V I DCGQLS
Sbjct:  119 FFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.488e-18
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CT KT WL GKHVVFGQVVEGMDVV+ IEKVGS SGRT+K VV  DCGQL
Sbjct:  119 FFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 170
            FF+CT  T WL GKHVVFGQVVEGMDVVKAIEKVG+ +G T+K V +ADCGQLS
Sbjct:  119 FFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
The following BLAST results are available for this feature:
BLAST of CF838790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CYPH_CATRO3.321e-2188.89Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CP18C_ARATH9.662e-2183.33Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP19B_ARATH3.671e-2079.63Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CYPH_SOLLC4.795e-2084.91Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_ALLCE8.179e-2083.33Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CP19A_ARATH2.380e-1979.63Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CYPH_LUPLU9.043e-1975.93Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP18D_ARATH2.631e-1877.78Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_BRANA4.488e-1879.25Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CYPH_MAIZE1.705e-1775.93Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838790 ID=CF838790; Name=CF838790; organism=Citrus sinensis; type=EST; length=450bp
CTGTATAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCTTTGGGAAG
CACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGTTATATTACATATCCTTTTTTATGTTTTTTAAAAAAAAAAAAAAAA
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