CF838814

Overview
NameCF838814
Unique NameCF838814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1280 contig Csv1_Contig1280:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 444.891 bits (1143), Expect = 2.738e-124
Identity = 220/232 (94.83%), Postives = 229/232 (98.71%), Query Frame = 1
Query:  166 QETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            QE+DKNIEIWKIKKLIK LE+ARGNGTSMISLIMPPRDQ++RVTKML DE+GTASNIKSRVNRQSVL+AITSAQQRLKLYNKVPPNGLVLYTGT+VT+DGKEKKVTIDFEPFKPINASLYLCDNKFHTE LNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGLILAGSADFKTE
Sbjct:    4 QESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTE 235          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 444.121 bits (1141), Expect = 4.671e-124
Identity = 219/236 (92.80%), Postives = 230/236 (97.46%), Query Frame = 1
Query:  154 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            M D  + DKNIEIWKIKKLIK+LE+ARGNGTSMISLIMPPRDQ+SRVTKMLGDE+GTASNIKSRVNRQSVL AITSAQQRLKLYN+VPPNGLVLYTGT+V EDGKEKKVTIDFEPF+PINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQ++INPATSQPNVSGLILAGSADFKTE
Sbjct:    1 MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTE 236          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 439.884 bits (1130), Expect = 8.809e-123
Identity = 218/232 (93.97%), Postives = 226/232 (97.41%), Query Frame = 1
Query:  166 QETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            +E D NIEIWKIKKLIK LESARGNGTSMISLIMPPRDQ+SRVTKMLGDE+GTASNIKSRVNRQSVL+AITSAQQRLKLYNKVP NGLVLYTGT+V +DGKEKKVT DFEPF+PINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGLILAGSADFKTE
Sbjct:    3 EEADTNIEIWKIKKLIKGLESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKEKKVTFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTE 234          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 389.037 bits (998), Expect = 1.783e-107
Identity = 195/235 (82.98%), Postives = 210/235 (89.36%), Query Frame = 1
Query:  163 GQET--DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            G+ET  D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQISRV+KML DEFGTASNIKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GT+VTE+GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D+KFGFIVMDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE+ATQ FI     +PN++GLILAGSADFKTE
Sbjct:    3 GEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATQLFI--TNDKPNIAGLILAGSADFKTE 235          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 5.188e-107
Identity = 191/229 (83.41%), Postives = 206/229 (89.96%), Query Frame = 1
Query:  175 DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D+KFGFIVMDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI     +PNV+GL+LAGSADFKTE
Sbjct:    9 DRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQVSRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTDEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--TNDRPNVTGLVLAGSADFKTE 235          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.669e-105
Identity = 191/234 (81.62%), Postives = 206/234 (88.03%), Query Frame = 1
Query:  160 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VTE+GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTE 235          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.669e-105
Identity = 191/234 (81.62%), Postives = 206/234 (88.03%), Query Frame = 1
Query:  160 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VTE+GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTE 235          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 382.489 bits (981), Expect = 1.669e-105
Identity = 191/234 (81.62%), Postives = 206/234 (88.03%), Query Frame = 1
Query:  160 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VTE+GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTE 235          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 382.489 bits (981), Expect = 1.669e-105
Identity = 191/234 (81.62%), Postives = 206/234 (88.03%), Query Frame = 1
Query:  160 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VTE+GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTE 235          
BLAST of CF838814 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 382.489 bits (981), Expect = 1.669e-105
Identity = 191/234 (81.62%), Postives = 206/234 (88.03%), Query Frame = 1
Query:  160 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTE 861
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VTE+GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTE 235          
The following BLAST results are available for this feature:
BLAST of CF838814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1Z_ARATH2.738e-12494.83Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH4.671e-12492.80Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH8.809e-12393.97Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_DROME1.783e-10782.98Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_POLMI5.188e-10783.41Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR1.669e-10581.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA1.669e-10581.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT1.669e-10581.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT1.669e-10581.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB1.669e-10581.62Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838814 ID=CF838814; Name=CF838814; organism=Citrus sinensis; type=EST; length=863bp
GACGGGATTCTCTCTCCTTTAGAGATTTGTCATTGGAGGTCTTTCTTGAA
GGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCCGTCGCCGATTA
CCTCTCTCATCTAGAGTATATCACAGTTTCTGCAGTTTCAACCAGTACCC
ACAATGTCAGATGGTCAGGAAACCGATAAGAACATAGAGATATGGAAAAT
CAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAATGGAACCAGTA
TGATATCCCTTATTATGCCTCCACGTGATCAAATTTCTCGGGTCACAAAG
ATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAAAGTAGGGTCAA
CCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCAGAGGCTGAAGC
TATATAACAAGGTTCCTCCCAATGGGCTGGTGCTTTATACTGGAACAGTT
GTTACTGAGGATGGCAAGGAAAAGAAAGTGACAATTGACTTTGAACCTTT
CAAGCCTATTAATGCATCGTTGTATCTCTGTGATAACAAGTTTCACACTG
AAGCCTTGAATGAACTCTTAGAATCTGATGATAAATTTGGGTTTATTGTC
ATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGAAACACAAGAGA
GGTGCTTCATAAGTTTACTGTTGATCTGCCGAAGAAGCATGGAAGAGGAG
GGCAGTCAGCTCTTCGTTTTGCTCGTCTTCGGATGGAGAAACGGCACAAC
TATGTGAGGAAGACAGCAGAGCTTGCTACACAGTTCTTTATCAATCCTGC
TACCAGTCAGCCCAATGTGTCTGGATTAATTCTTGCTGGGTCTGCTGATT
TCAAAACTGAGCT
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