CF838831

Overview
NameCF838831
Unique NameCF838831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9318 contig Csv1_Contig9318:23..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2_HUMAN (Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.511e-42
Identity = 90/185 (48.65%), Postives = 113/185 (61.08%), Query Frame = 3
Query:  282 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            +T F++ L QL +++ K                       LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF  LA IY  RG  L+ YPGAFN
Sbjct:    1 MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKIPG-----ESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFN 180          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2_BOVIN (Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.511e-42
Identity = 90/182 (49.45%), Postives = 114/182 (62.64%), Query Frame = 3
Query:  291 FKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            F++ L QL V++ K                       LPE +NSPY    FP YAE I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HLFDID+PGKITF ES++L+ G++ ++ DT   R+G+GICYDIRF  LA IY  RG  L+ YPGAFN
Sbjct:    4 FRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEKIP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHLFDIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFN 180          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2_RAT (Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 90/185 (48.65%), Postives = 113/185 (61.08%), Query Frame = 3
Query:  282 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            ++ F++ L QL V++ K                       LPE +NSPY  + FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF  LA IY  RG  L+ YPGAFN
Sbjct:    1 MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEKIPG-----ESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVYPGAFN 180          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2_MOUSE (Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.542e-42
Identity = 89/185 (48.11%), Postives = 112/185 (60.54%), Query Frame = 3
Query:  282 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            ++ F++ L QL V++ K                       LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF  LA IY  RG  L+ YPGAFN
Sbjct:    1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPG-----ESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFN 180          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2A_XENLA (Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.185e-41
Identity = 87/185 (47.03%), Postives = 112/185 (60.54%), Query Frame = 3
Query:  282 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            + KFK+ L Q  V+  K                       LPE +NSPY    FP YAE I        ST +LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYDIRF  LA IY ++G  L+ YPGAFN
Sbjct:    1 MAKFKLSLVQFLVSPVKSDNLNRACKLIKEAAQKGAQIVALPECFNSPYGTTYFPEYAEKIPG-----ESTELLSQVAKECGIYLIGGSIPEEDCGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDIRFAELAQIYANKGCQLLVYPGAFN 180          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: YAUB_SCHPO (UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe GN=SPAC26A3.11 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.055e-40
Identity = 90/182 (49.45%), Postives = 111/182 (60.99%), Query Frame = 3
Query:  291 FKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            F++GL QL+ T DK                       LPEI+NSPY    F  YAE I+   ++SPS   LS +A+  K  + GGSIPER   +LYNT  VF   GKLIA HRKIHLFDIDIPG ++F ES SL+ G+  T+VDT+ G+ G+GICYDIRF  LAMI    G  ++ YPGAFN
Sbjct:   44 FRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIE---ESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELAMIAARNGCSVMIYPGAFN 222          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2B_XENLA (Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.009e-40
Identity = 84/185 (45.41%), Postives = 111/185 (60.00%), Query Frame = 3
Query:  282 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            + KF++ L Q  V+  K                       LPE +NSPY    FP YAE I        ST +LS+VA+   I ++GGSIPE    + YNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYD+RF  LA IY ++G  L+ YPGAFN
Sbjct:    1 MAKFRLSLVQFLVSPVKSDNLNKACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEKIPG-----ESTELLSQVAKECGIYLIGGSIPEEDSGKFYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDMRFAELAQIYANKGCQLLVYPGAFN 180          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2_PONAB (Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.838e-40
Identity = 88/185 (47.57%), Postives = 110/185 (59.46%), Query Frame = 3
Query:  282 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            +  F++ L QL +++                         LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDID+PGKITF ESK+L+ G++    DT   R+G+GICYD+RF  LA IY  RG  L+ YPGAFN
Sbjct:    1 MASFRLALIQLQISSINSDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFPEYAEKIPG-----ESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFCTFDT-YCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFN 179          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2_XENTR (Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.931e-40
Identity = 84/185 (45.41%), Postives = 110/185 (59.46%), Query Frame = 3
Query:  282 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            + KF++ L Q  V+  K                       LPE +NSPY    FP YAE I        ST  LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF  LA +Y  +G  L+ YPGAFN
Sbjct:    1 MAKFRLSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEKIPG-----ESTERLSQVAKECGIYLIGGSIPEEDSGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFETPYCKVGVGICYDIRFAELAQLYSKKGCQLLVYPGAFN 180          
BLAST of CF838831 vs. ExPASy Swiss-Prot
Match: NIT2_DANRE (Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.990e-39
Identity = 85/185 (45.95%), Postives = 111/185 (60.00%), Query Frame = 3
Query:  282 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQGLAMIYGSRGAHLICYPGAFN 836
            ++KF++ + QL V+  K                       LPE +NSPY    F  YAE I        ST +LSE A+   I +VGGSIPE  G +LYNTC VFG DG L+  HRKIHLFDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF  LA IY  +G  L+ YPGAFN
Sbjct:    1 MSKFRLAVVQLHVSKIKADNLGRAQTLVKEAAGQGAKVVVLPECFNSPYGTGFFKEYAEKIPG-----ESTQVLSETAKKCGIYLVGGSIPEEDGGKLYNTCSVFGPDGTLLVTHRKIHLFDIDVPGKIRFQESETLSPGKSLSMFETPYCKVGVGICYDIRFAELAQIYAKKGCQLLVYPGAFN 180          
The following BLAST results are available for this feature:
BLAST of CF838831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIT2_HUMAN2.511e-4248.65Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV... [more]
NIT2_BOVIN2.511e-4249.45Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1[more]
NIT2_RAT3.280e-4248.65Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE... [more]
NIT2_MOUSE9.542e-4248.11Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV... [more]
NIT2A_XENLA6.185e-4147.03Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE... [more]
YAUB_SCHPO1.055e-4049.45UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces ... [more]
NIT2B_XENLA4.009e-4045.41Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE... [more]
NIT2_PONAB6.838e-4047.57Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV... [more]
NIT2_XENTR8.931e-4045.41Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 P... [more]
NIT2_DANRE1.990e-3945.95Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838831 ID=CF838831; Name=CF838831; organism=Citrus sinensis; type=EST; length=838bp
TTTGAATAGAGCATATAAATAACAGGGAAGAAAGTGAAATGAAGTCAGCA
GTACCAATCACTTCTAAGATTCATCTAAATCTCAATCTCAATCTCAGACG
CAATCACTTGTACTCCCCTCTCTCTCGTTCCATATTTCGAGGAAAGGCTA
AACCCGTCTTCCAATCTCCTCCTCTCATCCGCACACACTCGTCAAATCCA
AATCCAAATCCAATCATGGCTTCCTCTTTCAAGCCCGAACAAGCCAGGGC
CCCACCCGCCCTTCCCTTGCCCACTCCCCCCGTCACCAAGTTTAAGGTTG
GGCTTTGCCAATTGTCAGTAACGGCTGACAAAGAAAGGAACATCGCTCAT
GCTCGTAGAGCCATTGAGGAGGCGGCTGAGAAAGGCGCCAAGCTCATTAT
TTTGCCTGAGATTTGGAACAGTCCCTATTCGAATGACAGCTTCCCAGTTT
ATGCCGAAGACATTGATGCTGGTGGTGATGCATCTCCTTCCACCGCCATG
CTTTCTGAAGTTGCTCGTCTTCTGAAGATCACTATAGTTGGCGGCTCTAT
TCCCGAACGTTCTGGGGATCGATTGTACAATACTTGCTGCGTCTTTGGTT
CTGATGGAAAACTGATAGCTAAGCACCGGAAGATACACCTTTTTGATATT
GACATTCCCGGGAAGATTACCTTTATAGAATCAAAGTCCCTTACAGCAGG
GGAGACACCAACCATTGTGGACACAGATGTTGGGCGTATTGGAATAGGTA
TTTGTTATGATATTCGGTTTCAGGGACTGGCAATGATATATGGGAGCAGA
GGTGCTCACTTGATATGCTATCCTGGGGCATTTAACAT
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