CF838836

Overview
NameCF838836
Unique NameCF838836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838836 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 472.241 bits (1214), Expect = 1.533e-132
Identity = 219/234 (93.59%), Postives = 227/234 (97.01%), Query Frame = 3 
Query:  135 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWA 836
            PLLKDELDIVIPTIRNLDFLE WRPFF+ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDP+G EINALEQHI+NLLSPSTPFFFNTLYDPYR+G DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP ERNTRFVDA++TIPKG+LFPMCGMNL FNRELIGPAMYFGLMGDGQPIGRYDDMWA
Sbjct:    9 PLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWA 242
[Close]
BLAST of CF838836 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 471.47 bits (1212), Expect = 2.615e-132
Identity = 219/236 (92.80%), Postives = 227/236 (96.19%), Query Frame = 3 
Query:  129 AVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWA 836
            A PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYRDGADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDA+MTIPKGTLFPMCGMNL F+R+LIGPAMYFGLMGDGQPIGRYDDMWA
Sbjct:    4 ATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHERNTRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWA 239
[Close]
BLAST of CF838836 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 469.544 bits (1207), Expect = 9.938e-132
Identity = 218/237 (91.98%), Postives = 228/237 (96.20%), Query Frame = 3 
Query:  126 PAVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWA 836
            P+ PLLKDELDIVIPTIRNLDFLE WR FFQ YHLIIVQDGDP+KTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLLSPSTPFFFNTLYDPYR+GADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQLVKP ERN R+VDA+MTIPKGTLFPMCGMNL F+R+LIGPAMYFGLMGDGQPIGRYDDMWA
Sbjct:   13 PSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKPKERNERYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWA 249
[Close]
BLAST of CF838836 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 464.922 bits (1195), Expect = 2.448e-130
Identity = 216/234 (92.31%), Postives = 224/234 (95.73%), Query Frame = 3 
Query:  135 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWA 836
            PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK I VPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDA+MTIPKGTLFPMCGMNL F+RELIGPAMYFGLMGDGQPIGRYDDMWA
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWA 243
The following BLAST results are available for this feature:
BLAST of CF838836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG_PEA1.533e-13293.59Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU2.615e-13292.80Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_MAIZE9.938e-13291.98Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU2.448e-13092.31Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838836 ID=CF838836; Name=CF838836; organism=Citrus sinensis; type=EST; length=838bp
CTACGGTCTATCCTTCCTCTCCTCCTGTTCTTCTTCTTACACAAATCAAA
GCCTCTCATTTTTCTTTTTCCTTCTTTCTTTCTTTTTTCTGAAACAAAAT
GGCGGCGGCAGCAACGACAACAAGGCCGGCTGTGCCGCTGCTGAAAGACG
AGCTGGACATCGTGATCCCCACGATCCGAAACTTGGACTTCTTGGAGCAG
TGGAGGCCGTTTTTTCAGGCCTATCATTTGATCATCGTTCAGGATGGTGA
CCCTTCGAAGACCATCAAAGTCCCTGAGGGATTTGACTACGAGCTCTATA
ATCGTAACGATATTAACCGGATTCTGGGTCCCAAGGCTTCTTGCATATCC
TTCAAGGACTCTGCCTGCAGGTGCTTTGGCTACATGGTGTCCAAGAAGAA
GTATGTTTACACCATTGATGACGATTGCTTTGTTGCTAAAGACCCATCTG
GCAAAGAAATTAATGCACTGGAGCAGCACATAAGGAACCTGCTGAGTCCA
TCCACCCCATTTTTCTTTAACACTCTGTACGACCCATACCGTGATGGAGC
TGACTTCGTTCGCGGATATCCGTTCAGTCTTCGTGAGGGTGTCCCCACTG
CTGTTTCTCATGGCCTCTGGCTCAACATCCCAGATTATGATGCTCCCACC
CAGCTTGTCAAGCCTCTTGAGAGGAACACTAGGTTTGTGGATGCAATTAT
GACAATACCAAAGGGAACCCTCTTCCCCATGTGTGGTATGAATCTGGGAT
TCAACCGTGAATTGATCGGTCCTGCAATGTACTTCGGACTCATGGGTGAT
GGCCAGCCAATTGGACGCTATGATGACATGTGGGCTGG
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