CF838843

Overview
NameCF838843
Unique NameCF838843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838843 vs. ExPASy Swiss-Prot
Match: NDUS6_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6 OS=Arabidopsis thaliana GN=At1g49140 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.820e-42
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:   13 GRKKATVEFDETAPD-FDPSDPYKDPVAMLEMREHIVREKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRGIGWGKDGRHPSLHGPK 303
            GRKK   EF+E+APD FDP +PYKDPVAM+EMREHIVREKWI IEKAKI+REK+KWCYR+EGVNH QKCRHLV QYL++TRG+GWGKD R  SLHGPK
Sbjct:    2 GRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPK 99
The following BLAST results are available for this feature:
BLAST of CF838843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NDUS6_ARATH7.820e-4278.57NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06M07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838843 ID=CF838843; Name=CF838843; organism=Citrus sinensis; type=EST; length=640bp
AATCCGAAAACGGGAAGGAAGAAAGCAACGGTTGAGTTCGATGAAACGGC
GCCGGACTTCGATCCGTCGGACCCGTACAAGGACCCGGTGGCGATGCTGG
AGATGAGGGAGCACATAGTGAGGGAGAAGTGGATCGACATCGAGAAGGCG
AAGATCATAAGAGAGAAGCTCAAGTGGTGCTATCGCATCGAAGGCGTTAA
TCACATGCAGAAGTGCCGTCACCTCGTTAACCAGTACCTCGAGTCCACTC
GCGGCATCGGCTGGGGCAAGGACGGCCGGCATCCCTCGCTTCACGGTCCG
AAGGTGGAGGCTGTGGAGTCTGAAGAATGATGATCTTTTTTAAGGAATGA
ATAAGGTCATTGCACTTGGCCATGTGGAGGAATGCCTAAAGTGTAGCAGT
GGCTGGGCCAGTTCATCTTCCAGTTTGCCTGTTGTTTTCTGTCTTGTGGT
CTACTTATAACATTATTTATTTTCCCATCTTCTTATGTTAAAAATGGCGG
CCAGATGATACTGGCATCTGCTTACATCTTAGATCTTTGCATTGGCATCT
GAATATTGGTTGCAATTTGGACAGAGTAAAAAATGAAAAGTACATCAGAT
AATGTTAATAAGCTTCTTGTCGTCAAAAAAAAAAAAAAAA
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