CF838915

Overview
NameCF838915
Unique NameCF838915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838915 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.742e-21
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = -1 
Query:  227 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKGTD 403
            DNEGQTPLHYAVVCDREAIA+FLVKQNA+   KD DGNSP  +CESDWPW+  +AK  D
Sbjct:  296 DNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLDLCESDWPWIRDSAKQAD 354
[Close]
BLAST of CF838915 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = -1 
Query:  251 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM 403
            DNEGQT LHYAVVC+REA+A+FLVKQ AD  +KD DGNSP  +CES+W WM
Sbjct:  281 DNEGQTSLHYAVVCEREALAEFLVKQKADTTIKDEDGNSPLDLCESEWSWM 331
The following BLAST results are available for this feature:
BLAST of CF838915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ACBP2_ARATH4.742e-2174.58Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
ACBP1_ARATH4.154e-1772.55Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06P16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838915 ID=CF838915; Name=CF838915; organism=Citrus sinensis; type=EST; length=403bp
TAAAATCATACCTATGCCATTTCACCATAAATTTTGATTCCGCGTGTTCT
CACTGTAACAAACAGAGGAAAAGAAATAACTAAAGCAGGGGACCAGGGCA
GAGAAAATATTACCCTATATTAATAATATAACATTACGATTAGAAGAGGT
TAAAGGGTTATATACTGCCATGTACAACCACACAGAATTTGTCAAGAAAT
ACTTAAGCCAATGTAACAAACCATCAGTCAGTCCCTTTAGCAGCATGTAG
CATCCATGGCCAGTCCGACTCACAGACATGACAAGGAGAATTGCCATCAT
TATCCTTCATGCCTATATCTGCATTTTGCTTCACAAGAAACTGAGCAATG
GCTTCCCTATCACATACAACAGCATAATGCAATGGAGTTTGTCCTTCATT
GTC
back to top