CF931515

Overview
NameCF931515
Unique NameCF931515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10266 contig Csv1_Contig10266:459..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SF13A_MOUSE (Splicing factor, arginine/serine-rich 13A OS=Mus musculus GN=Sfrs13a PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.823e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 417
            TSL VRN+  D R EDLR  FG++G + D+Y+P D+YT  PRGF +VQ+ D  DA DA +++D   + GR++ + FA+ +RK P++M
Sbjct:   10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQM 96          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SF13A_HUMAN (Splicing factor, arginine/serine-rich 13A OS=Homo sapiens GN=SFRS13A PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.823e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 417
            TSL VRN+  D R EDLR  FG++G + D+Y+P D+YT  PRGF +VQ+ D  DA DA +++D   + GR++ + FA+ +RK P++M
Sbjct:   10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQM 96          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SRR35_HUMAN (35 kDa SR repressor protein OS=Homo sapiens GN=SRRP35 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEM 417
            TSL +RN+    RPEDLR  FG++G + D+Y+P D+YT  PRGF +VQ+ D  DA DA Y+++   + GR++ + FA+ +RK P +M
Sbjct:   10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQM 96          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 411
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 98          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 411
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 98          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 411
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 98          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 411
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 98          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 411
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 98          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 411
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 98          
BLAST of CF931515 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPS 411
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 98          
The following BLAST results are available for this feature:
BLAST of CF931515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SF13A_MOUSE2.823e-1847.13Splicing factor, arginine/serine-rich 13A OS=Mus m... [more]
SF13A_HUMAN2.823e-1847.13Splicing factor, arginine/serine-rich 13A OS=Homo ... [more]
SRR35_HUMAN4.816e-1845.9835 kDa SR repressor protein OS=Homo sapiens GN=SRR... [more]
SFRS2_RAT5.510e-1449.41Splicing factor, arginine/serine-rich 2 OS=Rattus ... [more]
SFRS2_PIG5.510e-1449.41Splicing factor, arginine/serine-rich 2 OS=Sus scr... [more]
SFRS2_PANTR5.510e-1449.41Splicing factor, arginine/serine-rich 2 OS=Pan tro... [more]
SFRS2_MOUSE5.510e-1449.41Splicing factor, arginine/serine-rich 2 OS=Mus mus... [more]
SFRS2_HUMAN5.510e-1449.41Splicing factor, arginine/serine-rich 2 OS=Homo sa... [more]
SFRS2_CHICK5.510e-1449.41Splicing factor, arginine/serine-rich 2 OS=Gallus ... [more]
SFRS2_BOVIN5.510e-1449.41Splicing factor, arginine/serine-rich 2 OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionEST0589 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P229 similar to serine/arginine-rich protein (acc# BAC10152), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931515 ID=CF931515; Name=CF931515; organism=Citrus sinensis; type=EST; length=570bp
CAGATTCGCTGATTCGTCCTTCCGAGGTTGTGACATAGAGTGCCAATGAG
GGGTCGAAGCTACAGTTACAGTCCCTCGCCGCCAAGAGACTATGGCCGGC
GATATCGCAGCCCCAGCCCTCGAGGTCACTATGGCGGTCGTGGAAGAGAT
CTCCCGACTAGTCTTCTGGTTCGCAACCTTCGCCATGATTGTAGACCAGA
AGATCTTCGTGGACCCTTTGGGCAATTTGGTCGTTTAAAGGACATCTACT
TGCCTCGAGACTATTATACTGGGGAGCCACGTGGTTTTGGGTTTGTCCAG
TATATAGACCCAGCTGATGCTGCAGATGCCAAATACCACATGGATGGTTA
TTTACTTTTAGGCCGAGAACTGACTGTTGTATTTGCCGAGGAAAACAGGA
AGAAACCTTCAGAAATGAGGGCAAGAGAACGTTTTAGGAGTCGATCATAC
GATCGGAGGCAATCTCCACCTCGTTATTCTCGATCACCACACTATGCACG
TGGTTATTCTCGTAGTCCAGATTATTATTCTCCCCCTCCCAGGCGAGGGC
GAGACTCAAGGTCAATTTCA
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